Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I23
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   3.4  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 28   4.5  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    28   6.0  

>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 221 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 126
           ++W     C+  A   LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 61  TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGM----SNIQDMAS 228
           T ++T +  +  +   + GL+G    +DP  F +   SF+ + LMQ +    S ++++A 
Sbjct: 671 TASLTSILTVQQLSTGIQGLDGLIASSDPIGFQV--GSFAKSYLMQELGVPESRLRELAI 728

Query: 229 KAGFGPNMNGAAISTVVDSAGKKMTKLLISENGKISTM 342
              +  ++    ++ +VD       +L +S N +  T+
Sbjct: 729 -TDYASSLQTGVVAAIVDEL--PYVELFLSTNCQFRTV 763


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 7/28 (25%), Positives = 21/28 (75%)
 Frame = -3

Query: 133 RPHLLTRTRQPKSKE*LQPSSLYKFICV 50
           RP+   ++++P++ +   PS+++K++C+
Sbjct: 3   RPNTRNKSKRPRADDCESPSAVFKYVCI 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,102
Number of Sequences: 37544
Number of extensions: 238961
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)