Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I22
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 155 4e-38
07_01_0442 - 3348638-3349126,3349978-3350322 44 1e-04
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 35 0.089
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 33 0.36
09_01_0057 - 916973-917287,917371-917495,917587-918241 31 0.83
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 30 1.9
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 30 1.9
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 3.4
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 3.4
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 4.4
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 29 5.9
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 5.9
02_05_0891 - 32554355-32555305 29 5.9
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 28 7.8
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 28 7.8
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 28 7.8
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 155 bits (376), Expect = 4e-38
Identities = 89/221 (40%), Positives = 119/221 (53%), Gaps = 13/221 (5%)
Frame = +3
Query: 168 GKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAK-GKTLKDEDTLNSLNIQD---- 332
G + G++ + ++++ I KK YP RQ L L + GK+ K ++ +
Sbjct: 39 GGLRSRGKAKVADLQDAIYAKTKK-YYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97
Query: 333 --GS-KLFLKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY----GTQTSSPEQVAT 491
GS + KDLGPQV + +F EY GPL +Y Y P Y G + P Q T
Sbjct: 98 GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHPVQ--T 155
Query: 492 VAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYTAPC 671
A W HY KR+ ET F+HRFSH T P+ N+FRNCAYYW F Y+AY+ NHPLYT
Sbjct: 156 YAMYYWCFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYTPVS 215
Query: 672 TTCYYIGLGGFVLCELGNLSIHILLKNLR-PPGTXIRRIPK 791
IG G +LC++ N HILL+NLR P G +IP+
Sbjct: 216 ELQMKIGFGFGILCQIANFYCHILLRNLRSPSGNGGYQIPR 256
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 486 ATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAY--HVNHPLY 659
A V + + H+ KR+ E LFIH++S G+MPL + Y + + Y H+ L
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQYS-GSMPLNTAATISSSYLVITATMIYAQHLAAGLP 156
Query: 660 TAPCTTCYYIGLGGFVLCELGNLSIHILLKNLR 758
P Y G+ F + GN H LL LR
Sbjct: 157 DPP-VDLLYPGVAAFAVGIAGNFYHHYLLSQLR 188
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 34.7 bits (76), Expect = 0.089
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 171 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 350
+I + E+S+ VK I+ + +++YP Q + + +GK LKD+ TL + + S L +
Sbjct: 14 EIEASPEASVAEVKRIIESTQGQNVYPADQQMLIH-QGKILKDDTTLEGNKVAENSFLVI 72
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 171 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 350
+I V + +VK I+ + + +YP Q + + +GK LKD+ TL+ + + S L +
Sbjct: 14 QIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIH-QGKVLKDDTTLDENKVLENSFLVI 72
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 654 LYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTXIRR 782
LY+AP + IG C+ + S+ L L PPG I+R
Sbjct: 296 LYSAPASPSGVIGASACFSCDSSSSSVDSLFAALEPPGRPIKR 338
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 786 ECGVXSCRADEGSSKVCECSGFLIRKEQNLQV--LCSNK*YRE 664
E G +C AD CEC G + +N +C+NK +R+
Sbjct: 50 EAGCTNCSADSTCKDDCECRGLYMSCSKNCHCSDMCTNKPFRK 92
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 249 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFV 419
P+RQ K+ KG LKD+ ++L ++DG KL + + + A GP+FV
Sbjct: 39 PERQ--KIMVKGGILKDDADWSTLGVKDGQKLMMIGTADE-----IVKAPEKGPVFV 88
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 462 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 566
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 318 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 353
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 462 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF-SH 566
Q++SPE + + +CW+ H A R +T+ + F SH
Sbjct: 322 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSH 357
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 462 VYHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWIRL 328
V HIK TV P+ QRV H + K +E + KAW+ L
Sbjct: 264 VAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIE-DNAEIKAWLAL 307
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 642 HDKPHRGQTTNNMHSF*TSSSMASYHVKSDE 550
HDKP RG+TT+ S +S +S+H ++ E
Sbjct: 81 HDKPSRGETTSISWSGNSSYLASSFHPRATE 111
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +3
Query: 585 NLFRNCAYYWL-FALYVA 635
N++R+ YYWL FA+YVA
Sbjct: 438 NMYRDLGYYWLRFAIYVA 455
>02_05_0891 - 32554355-32555305
Length = 316
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 456 GTQTSSPEQVATVAAICWSAHYAKRLFETLFIHRFSHGTMP 578
G + SSP++ A WS R+ E L HR HG++P
Sbjct: 124 GPKVSSPKRQAFHRI--WSTEDEVRILEALAAHRREHGSLP 162
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +3
Query: 585 NLFRNCAYYWL-FALYVA 635
N++R+ YYWL FA+Y+A
Sbjct: 478 NMYRDLGYYWLRFAIYIA 495
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/90 (22%), Positives = 45/90 (50%)
Frame = +3
Query: 81 IELSXXXXXXTDKHNMEXEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQ 260
+++S + +E +I ++ S + V + +KEKI + + ++Q
Sbjct: 88 VQMSHCAEDLNSESTIEIKIKTLDSQTY--NLRVNKRVPVPLLKEKI--ATVTGILSEQQ 143
Query: 261 ALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 350
+L +G+ LKD++ L++ +++DG L L
Sbjct: 144 --RLICRGRVLKDDELLSAYHVEDGHTLHL 171
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 234 KKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 350
K+ + PD+Q +L GK LKD TL NIQ S L L
Sbjct: 424 KEGIPPDQQ--RLIFAGKQLKDGRTLADYNIQKESTLHL 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,546,802
Number of Sequences: 37544
Number of extensions: 432107
Number of successful extensions: 1040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -