Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I19
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...   125   7e-30
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    48   2e-06
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   2.5  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.6  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.6  

>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score =  125 bits (301), Expect = 7e-30
 Identities = 53/114 (46%), Positives = 83/114 (72%)
 Frame = +1

Query: 127 RILPSRAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLD 306
           R +P +  + LTP AV+ +K++      KG + L++GV+Q+GC G +Y+L+Y +  +K D
Sbjct: 75  RFMPRKNVIKLTPLAVEHLKKMQSSASMKGKM-LRIGVKQKGCAGQAYSLEYIEKPDKFD 133

Query: 307 EEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGCGESFS 468
           E VKQDG++II+ ++A L ++G+ MDY +D L + F+F+NPN+K TCGCGESFS
Sbjct: 134 EIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPNVKSTCGCGESFS 187


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = +1

Query: 151 LVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGV 330
           L +  SA K++++I +++  +  V L+V V   GC+G   +          D    +   
Sbjct: 98  LYVKDSAKKQLEKIAERKPEENSV-LRVTVDGGGCHGYQVSFRMDNKIGNADTVFVRGKA 156

Query: 331 TIIIDKKAQLTLLGTEMDYVEDKLSAEF-VFNNPNIKGTCGCGESFSI 471
            ++ D  +   + G+E++Y  + + + F + NNP  K +CGC  SF +
Sbjct: 157 RVVADNISLPLISGSEIEYTNELIGSSFQLLNNPRAKTSCGCNVSFDV 204


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 178 KVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGVTIIIDKKAQ 357
           KVKE + KE     V +  G      NGL + +   +T +++  E ++  +  +ID+  +
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNGLGFGITLLRTTDRVKVEGEEYSLVDLIDQPVE 345


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 85  TKIIASATVRAVKKRILPSRAALVLTPSAVKKVKEIMQKEEAKG 216
           +K++  +  +AVKK ++PS     + PS  K   + +  + +KG
Sbjct: 524 SKVVVPSNAKAVKKSVVPSSP---VVPSPRKATNKSLSMDVSKG 564


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 349 KAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGC 453
           KA   L G EMD V    S +F+ +NPN+  T GC
Sbjct: 138 KAISVLKGHEMDIV----SLDFLPSNPNLFVTGGC 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,765
Number of Sequences: 5004
Number of extensions: 45861
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)