Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I19
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0363 - 18006175-18006268,18006341-18006458,18007695-18007884 123 1e-28
01_01_0040 - 306124-306413,307397-307601 96 3e-20
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682 83 2e-16
08_02_0408 - 16829483-16829545,16830359-16830467,16830650-168308... 60 2e-09
08_02_0445 + 17218136-17218333,17219595-17219725,17219908-17220112 49 3e-06
01_07_0105 - 41104655-41104851,41105818-41107150 29 3.4
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 29 4.5
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 28 7.9
01_01_0837 + 6533838-6534356 28 7.9
>12_02_0363 - 18006175-18006268,18006341-18006458,18007695-18007884
Length = 133
Score = 123 bits (297), Expect = 1e-28
Identities = 60/126 (47%), Positives = 90/126 (71%), Gaps = 2/126 (1%)
Frame = +1
Query: 94 IASATVRAVKKRILPS--RAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLS 267
+AS+ +A+ ++ PS + AL LT +A +V++++ + + Y L++GV+ RGCNGLS
Sbjct: 1 MASSVFKAMAEKAGPSVRKQALTLTDAAASRVRQLLGVRQ-RAY--LRLGVKARGCNGLS 57
Query: 268 YTLDYAKTKEKLDEEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTC 447
YT++YA K K DE V+ GV I+ID KA + ++GT+MD+++D L +EFVF NPN KG C
Sbjct: 58 YTMNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGEC 117
Query: 448 GCGESF 465
GCGESF
Sbjct: 118 GCGESF 123
>01_01_0040 - 306124-306413,307397-307601
Length = 164
Score = 95.9 bits (228), Expect = 3e-20
Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 26/134 (19%)
Frame = +1
Query: 142 RAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQ 321
+ AL LT +A ++++++ + Y L++GV+ RGCNGLSYTL+YA K K DE V+
Sbjct: 24 KQALALTDAAASRIRQLLSLRH-RPY--LRLGVKARGCNGLSYTLNYADEKGKFDEVVED 80
Query: 322 DGVTIIIDKKAQLTLLGTEMDYVEDKL--------------------------SAEFVFN 423
GV ++ID KA + ++GT+MDYV+D L +EFVF
Sbjct: 81 KGVKVLIDPKALMHVIGTKMDYVDDPLRFMICAQHFLLSTYYLLSLPYGGFSCRSEFVFI 140
Query: 424 NPNIKGTCGCGESF 465
NPN KG CGCGESF
Sbjct: 141 NPNSKGECGCGESF 154
>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
Length = 186
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Frame = +1
Query: 148 ALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKL--DEEVKQ 321
A+ LT A+K + ++ + E + L++GVRQ GC+G+SYT+++ D V+
Sbjct: 66 AISLTEKALKHLNKM--RAERNEDLCLRIGVRQGGCSGMSYTMEFEDRSNASPDDSVVEY 123
Query: 322 DGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGCGESFS 468
DG I+ D K+ L + G E+DY + + F F NPN TCGCG+SF+
Sbjct: 124 DGFAIVCDPKSLLFMFGMELDYSDALIGGGFAFQNPNATKTCGCGKSFA 172
>08_02_0408 -
16829483-16829545,16830359-16830467,16830650-16830874,
16832033-16832046
Length = 136
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +1
Query: 166 SAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGVTIIID 345
+A +++KE+ KE L++ V GC+GL Y+ K D ++DGV +++D
Sbjct: 33 NASQRLKELHAKEPPSEGKMLRLSVEAGGCSGLQYSFSLDVKKNSDDRIFEKDGVKLVVD 92
Query: 346 KKAQLTLLGTEMDYVEDKLSAEFVFN-NPNIKGTCGCGESFSI 471
+ + G +DY E+ + + FV + NP+ G C C SF +
Sbjct: 93 DVSYDFVKGATVDYEEELIHSTFVVSTNPSAVGGCSCKSSFMV 135
>08_02_0445 + 17218136-17218333,17219595-17219725,17219908-17220112
Length = 177
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Frame = +1
Query: 97 ASATVRAVKKRILPSRA---ALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLS 267
+SA A ++ PS A + +T ++++KE+ KE L++ V GC+G
Sbjct: 37 SSAAAAATERASPPSPADPDTVHMTDGCIRRLKELHAKEPPSEGKMLRLSVEAGGCSGFQ 96
Query: 268 YTLDYAKTKEKLDEEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFV 417
Y+ K D +++GV +++D + + G +DY E+ + + FV
Sbjct: 97 YSFSLDDKKNSDDRIFEKEGVKLVVDDVSYDFVKGATVDYEEELIRSAFV 146
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 145 AALVLTPSAVKKVKEIMQKEEAK 213
AA TP+AVKK+ E +KEEAK
Sbjct: 117 AAAKATPAAVKKIVEEKKKEEAK 139
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 184 KEIMQKEEAKGYVGLKVGVRQRGCNGLS---YTLDYAKTKEKLDEEVKQDGVTIIIDKKA 354
+ + K+++KG+ K G C+G S ++ ++ K + E + +T++ +K A
Sbjct: 193 RNLRPKKDSKGHPNQKAGTHSEPCSGFSDQTLRMNSSRNKHQGKEPSCEKRMTLVREKFA 252
Query: 355 QLTLLGTEMDYVEDK 399
+ L T+ + K
Sbjct: 253 EAKRLATDEKLLHTK 267
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 412 FVFNNPNIKGTCGCG 456
FV NP + G+CGCG
Sbjct: 65 FVSGNPGLHGSCGCG 79
>01_01_0837 + 6533838-6534356
Length = 172
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 103 ATVRAVKKRILPSRAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNG 261
A + + K ++ P RAA V +VK ++ KEEA + L V G G
Sbjct: 63 AAIGSSKPKVSPRRAAQGGQRKGVVRVKVVLTKEEAARLLSLTVVSAGAGAGG 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,484
Number of Sequences: 37544
Number of extensions: 244426
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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