Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I16
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.3  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   4.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 576 FXLFSHIFYYYFILITC 526
           F L ++ FYY FI++ C
Sbjct: 96  FLLCTYYFYYAFIILLC 112



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 FFFXLFSHIFYYYFILITCYV 520
           F   L  + FYY FI+ T ++
Sbjct: 107 FIILLCVYYFYYAFIIFTVHL 127


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 293 GQKSLFHNPHVNALPSGYEDDH 358
           G + L H+PH+N     Y  +H
Sbjct: 35  GLQGLHHSPHLNHAMHPYHANH 56


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 424 FNNLKYMNVLQTNFLKQNYCNLVV 353
           ++N+    +LQ++ L +NY N ++
Sbjct: 27  YDNVNLKEILQSDRLTENYVNCLL 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,452
Number of Sequences: 336
Number of extensions: 2699
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)