Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I16
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    69   2e-12
AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator prot...    28   5.6  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 140 WKRMSFFVAFPAIALGMLNAYLAHQEE-HHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 316
           WK++ F  + P +AL M  A+  H++   HERP  V Y ++ +R K FPW DG  SLFHN
Sbjct: 51  WKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAFLNVRNKPFPWSDGNHSLFHN 110

Query: 317 PHVNALPS-GYEDD 355
                +P  G+E D
Sbjct: 111 KAEQFVPGVGFEAD 124


>AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator protein
           1.2 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 25/74 (33%), Positives = 35/74 (47%)
 Frame = +2

Query: 284 WGDGQKSLFHNPHVNALPSGYEDDH*ITIILF*KVSLQNIHIF*VIKSLKNSNFFSTFYW 463
           +GDGQ   F+N  VN L +  + D  IT I      LQ+ H   +I  L+N     + + 
Sbjct: 342 FGDGQTQHFYNVDVNQLRN--DGDSVITEIYL--KHLQDFHE--IIAILRNEAMHISLWE 395

Query: 464 IKISLCYSL**IKK 505
             IS CY    +KK
Sbjct: 396 SMISACYEKQGMKK 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,477
Number of Sequences: 27780
Number of extensions: 242603
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)