Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I11
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 65 6e-11
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 65 6e-11
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 65 6e-11
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 36 0.041
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 31 0.89
AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical ... 28 8.3
AF039650-1|AAC14022.3| 607|Caenorhabditis elegans acetylcholine... 28 8.3
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 64.9 bits (151), Expect = 6e-11
Identities = 37/116 (31%), Positives = 60/116 (51%)
Frame = +3
Query: 15 ASSIAYAAILLQKDDSSELHPVHYMSKRTTDAESKYTSYELEALAIIECIKKFRHYLYGK 194
AS A+L Q+ + HP+ + SK + AE++Y +LEALA++ +++F+ +YG
Sbjct: 1336 ASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGT 1395
Query: 195 HFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 362
+ TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1396 AITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1449
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +3
Query: 531 VVPQKMEIEIIKRAHDN---GHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLAS 698
VVP+K+ ++K H+ GHF KK ++++ +Y P++ +E+ + TC CL A+
Sbjct: 1545 VVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN 1603
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 64.9 bits (151), Expect = 6e-11
Identities = 37/116 (31%), Positives = 60/116 (51%)
Frame = +3
Query: 15 ASSIAYAAILLQKDDSSELHPVHYMSKRTTDAESKYTSYELEALAIIECIKKFRHYLYGK 194
AS A+L Q+ + HP+ + SK + AE++Y +LEALA++ +++F+ +YG
Sbjct: 1239 ASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGT 1298
Query: 195 HFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 362
+ TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1299 AITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1352
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +3
Query: 531 VVPQKMEIEIIKRAHDN---GHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLAS 698
VVP+K+ ++K H+ GHF KK ++++ +Y P++ +E+ + TC CL A+
Sbjct: 1448 VVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN 1506
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 64.9 bits (151), Expect = 6e-11
Identities = 37/116 (31%), Positives = 60/116 (51%)
Frame = +3
Query: 15 ASSIAYAAILLQKDDSSELHPVHYMSKRTTDAESKYTSYELEALAIIECIKKFRHYLYGK 194
AS A+L Q+ + HP+ + SK + AE++Y +LEALA++ +++F+ +YG
Sbjct: 1250 ASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGT 1309
Query: 195 HFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 362
+ TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1310 AITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1363
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +3
Query: 531 VVPQKMEIEIIKRAHDN---GHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLAS 698
VVP+K+ ++K H+ GHF KK ++++ +Y P++ +E+ + TC CL A+
Sbjct: 1459 VVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN 1517
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 519 QHCLVVPQKMEIEI-IKRAHDNGHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPC 686
Q ++PQ ++ I AH H ++++TME + +IP L ++++ I C+ C
Sbjct: 820 QPVFIMPQSQLAKLLIWEAHGKYHTNEQQTMEATREKAWIPCLRRQVKKIIGKCVKC 876
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 531 VVPQKMEIE-IIKRAHDN-GHFSKKKTMELINKDYYIPKLEKKIEDYIATCIPCLLASRK 704
VV +K E++ +++R H+ GH +K+T ++ + Y + + ++ +IA+C C A +
Sbjct: 107 VVVKKGEVQKVLERIHELIGHLGQKRTQMVVLRKLYWRSVRQDVKTFIASCDFC-TAKKI 165
Query: 705 EGKR 716
+G++
Sbjct: 166 QGRK 169
>Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical
protein ZK455.5 protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +3
Query: 258 MSTRVARWILFLQDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGL 437
MS + +L L + + + KH + N Y+ + + S L++ + N +
Sbjct: 57 MSPNSSGLVLILNKHALNMTYNWLCNTKHLKGVHENSYIVTLDEESSSALKKTWPNVNQV 116
Query: 438 NAIMNILRDGKLYNDFYLQ 494
N ++ L+D Y D Y Q
Sbjct: 117 NIVVPGLKDSFNYGDGYYQ 135
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 408 RRAQESDNGLNA-IMNILRDGKLYNDFYLQGGLLCKG 515
+R+QE+ N + I+N R+ +++D +L+GGLL KG
Sbjct: 213 QRSQENGNIIQGGILNGFRERGIFHDGFLEGGLLNKG 249
>AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical
protein Y48B6A.8 protein.
Length = 607
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/127 (18%), Positives = 51/127 (40%)
Frame = +3
Query: 297 DYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRDGKLY 476
++ F I ++ + KH D ++AL +D+ ++ NI K +
Sbjct: 311 EFPFAIVSKDQNFFKHLDG-----FIALREGTYSTDVNLMFGINHDEGNFWNIYNLAKFF 365
Query: 477 NDFYLQGGLLCKGPQHCLVVPQKMEIEIIKRAHDNGHFSKKKTMELINKDYYIPKLEKKI 656
+ ++ GL C+ ++ E+++ A + K T D+Y ++ + +
Sbjct: 366 DKQSVKPGLDRDEFHECVDTAFAVQPELVRTAAKYVYSDPKCTDPKKKTDFYTEQVNQMV 425
Query: 657 EDYIATC 677
DY TC
Sbjct: 426 GDYFFTC 432
>AF039650-1|AAC14022.3| 607|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 607
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/127 (18%), Positives = 51/127 (40%)
Frame = +3
Query: 297 DYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRDGKLY 476
++ F I ++ + KH D ++AL +D+ ++ NI K +
Sbjct: 311 EFPFAIVSKDQNFFKHLDG-----FIALREGTYSTDVNLMFGINHDEGNFWNIYNLAKFF 365
Query: 477 NDFYLQGGLLCKGPQHCLVVPQKMEIEIIKRAHDNGHFSKKKTMELINKDYYIPKLEKKI 656
+ ++ GL C+ ++ E+++ A + K T D+Y ++ + +
Sbjct: 366 DKQSVKPGLDRDEFHECVDTAFAVQPELVRTAAKYVYSDPKCTDPKKKTDFYTEQVNQMV 425
Query: 657 EDYIATC 677
DY TC
Sbjct: 426 GDYFFTC 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,838
Number of Sequences: 27780
Number of extensions: 374894
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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