Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I11
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.1  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 117 YSQRQLFACSYNVLDVVHCCH 55
           YS+     C   +L+ VH CH
Sbjct: 6   YSEADASHCIQQILESVHHCH 26


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 354 LSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRD 464
           LSRN    L  +    DLR+ QE     NAI+ I  D
Sbjct: 219 LSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGD 255


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 QSFSNDTE*KRSSNEYESGTMDIVLTR 298
           +S +N       S EY S +M  V+TR
Sbjct: 686 RSVANSPTKNADSREYRSNSMGAVMTR 712


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,929
Number of Sequences: 438
Number of extensions: 4633
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)