Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I10
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    31   0.13 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    28   1.2  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.9  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   5.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.6  

>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 130 NWGNKEVEELLHKENISSCLIEICKTHDIDGPCLLSFVDRDFHTHPFDQLKLGERKRFIL 309
           +W N   EEL  + + ++  IE  +   +D    LS   ++F   P D++KLGE K  + 
Sbjct: 15  SWKNSRFEELQREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQP-DEVKLGEMKGLLK 73

Query: 310 L 312
           L
Sbjct: 74  L 74


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +1

Query: 88  KLEEYSETMESDILNW-GNKEVEELLHKENISSCLIEI-CKTHDIDGPCLLSFVDRDFHT 261
           KL+     +E  +  +   K   E  ++E ISS  IE+  K  +ID   L + + ++ H 
Sbjct: 352 KLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEID--MLRNKLLKEEHK 409

Query: 262 HPFDQLKLGERKRFILLVKKLQRHNRSAMMEL 357
           H     KL E  +++  ++  +R+N    +EL
Sbjct: 410 HHSTSEKLEELSKYVASIQDKERNNGQNALEL 441


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +1

Query: 79   PPIKLEEYSETMESDILNWGNKEVEELLHKENISSCLIEICKTHD 213
            PP +  + +E  +  +LN  + +++  L K N+++C I +C + D
Sbjct: 1118 PPARFGDVTEVTK--VLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 88  KLEEYSETMESDILNWGNKEVEELLHKENISSCLIEI 198
           KL EYSE + +  L   N     L H   IS C +++
Sbjct: 168 KLREYSEKVTASALKESNNVTSNLHHIRIISKCSLKL 204


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 337 RSAMMELGLCDDLINPATNINFLGT--NLSHLS 429
           ++ + E  +C D INP+T+I   GT  ++ HLS
Sbjct: 191 KNRLYECSVCTDTINPSTSIWSCGTCYHVFHLS 223


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 238 TIAGTVRLYRAFYIFLLNSWKYSLYVIILPLLCYPNLEYRTPSF-HCILLILLVVQKSN 65
           T+   +R Y   Y+FL ++ +Y   +  L    YPNL   T +   CIL  LL + + +
Sbjct: 72  TLFQQLRFYLLNYLFLEDTSEYKSVLCSLDESVYPNLLPLTANICPCILKALLALVRQH 130


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 460 LSFAGNTECVSSYPPADIKASKLRPEVWKTAIALG 564
           +SF        S PP  + A+K+R E  K A+++G
Sbjct: 518 MSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMG 552


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 91  LEEYSETMESDILNWGNKEVEELLHKENISSCLIEICKT 207
           +++YSE   +D L+  +  +  +LH EN +S   E+  T
Sbjct: 763 VKDYSEVSRADNLDASSDTIFSVLHAENEASITKEVHST 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,406
Number of Sequences: 5004
Number of extensions: 67119
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)