Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I09
         (465 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DF33 Cluster: Putative uncharacterized protein; n=1; ...    31   9.4  
UniRef50_O96215 Cluster: Putative uncharacterized protein PFB061...    31   9.4  
UniRef50_Q8F8N2 Cluster: tRNA pseudouridine synthase D; n=4; Lep...    31   9.4  

>UniRef50_A6DF33 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 336

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 194 LSRLN*LLDNFRFNVNKYASRINLEELLLFEVLYNCTFIQSFNRKLFVI 340
           L ++N   +NF FN+     ++N+EEL+L     N  +   ++  L+VI
Sbjct: 249 LKKINKAFNNF-FNIEIIQDKLNIEELVLLNGKKNIKYFSYYSSSLYVI 296


>UniRef50_O96215 Cluster: Putative uncharacterized protein PFB0610c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0610c - Plasmodium falciparum
           (isolate 3D7)
          Length = 387

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 197 SRLN*LLDNFRFNVNKYASRINLEELLLFEVLYNCTFIQSFNRKLFVI 340
           S+LN  + N +F   KY +   +EE+  F+ L N   +QS N K  ++
Sbjct: 132 SQLNNTISNIQFEKKKYKNNFLIEEVYDFKNLKNQNSLQSTNTKKCIV 179


>UniRef50_Q8F8N2 Cluster: tRNA pseudouridine synthase D; n=4;
           Leptospira|Rep: tRNA pseudouridine synthase D -
           Leptospira interrogans
          Length = 408

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 166 FVRNINMSAFHYKHSRQFELNLINLFLNDSSSCLKLIVTD 47
           F+   +   F   HS +F L ++  F  D+ +CLKLI+TD
Sbjct: 150 FINYYDSQRFSRFHS-EFRLPILPFFKGDAETCLKLILTD 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,558,214
Number of Sequences: 1657284
Number of extensions: 3562083
Number of successful extensions: 7898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7898
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)