Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I08
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.1  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 236 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 135
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 211 GHQVHAQWKVVN 176
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 218 IRRTPSARTVESRQRSLSSYP 156
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 219 YSSDTKCTHSGKSSTFALFLPKSKIRILGS 130
           Y+ D  CTH       ++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 477 GGRHRSSRLCAVPSSSSP 530
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 477 GGRHRSSRLCAVPSSSSP 530
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 477 GGRHRSSRLCAVPSSSSP 530
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 477 GGRHRSSRLCAVPSSSSP 530
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 218 IRRTPSARTVESRQRSLSSYP 156
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 620  ANDGCIVQYRPEHGPLDAW 676
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 249 ASKASELSCSYSSDTKCTHSGKSSTF 172
           A   SEL  S++S +  +H G+ + F
Sbjct: 368 AQTLSELDLSWNSISSLSHGGQLARF 393


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,014
Number of Sequences: 336
Number of extensions: 4276
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)