Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I07
(473 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 131 7e-30
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 112 4e-24
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 105 4e-22
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 103 2e-21
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 97 2e-19
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 96 3e-19
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 73 2e-12
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 70 3e-11
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 69 4e-11
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 69 7e-11
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 66 3e-10
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 65 7e-10
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 62 6e-09
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 61 1e-08
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 55 7e-07
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 2e-04
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 43 0.003
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 38 0.11
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 37 0.26
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 36 0.35
UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subuni... 34 1.4
UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genom... 32 5.6
UniRef50_Q54XH1 Cluster: Putative uncharacterized protein; n=1; ... 32 5.6
UniRef50_Q4T6N5 Cluster: Chromosome 9 SCAF8684, whole genome sho... 32 7.4
UniRef50_Q4RSQ2 Cluster: Chromosome 12 SCAF14999, whole genome s... 32 7.4
UniRef50_P19174 Cluster: 1-phosphatidylinositol-4,5-bisphosphate... 31 9.8
UniRef50_P03203 Cluster: Epstein-Barr nuclear antigen 4; n=6; Hu... 31 9.8
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 131 bits (317), Expect = 7e-30
Identities = 61/105 (58%), Positives = 78/105 (74%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R KPFS EPNN+ ++ S+RY+G++HKK +GVV D+KGFT V KK K ++PAKN +
Sbjct: 23 RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPAKNTV 82
Query: 181 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 315
R FKAG RRSL K+K LL + YR DL +A LRRASA+LRSQ+P
Sbjct: 83 RVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKP 127
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 112 bits (269), Expect = 4e-24
Identities = 55/105 (52%), Positives = 69/105 (65%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R KPFS EP N+TNL SFRY+GL+H K + + ++KG VY + K KPAK +
Sbjct: 23 RDIRKPFSTEPGNLTNLSSFRYSGLVHHKTITITP-AEKKGVNFVYNRKKVLNKPAKAPV 81
Query: 181 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 315
+ K G RR+L K+ ++KAN YR DL A LRRASAILRSQRP
Sbjct: 82 KVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASAILRSQRP 126
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 105 bits (253), Expect = 4e-22
Identities = 54/104 (51%), Positives = 64/104 (61%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R KPFS EP N+ N+ SFRYNGL+ K V V D KGF V K+AK KP K+ I
Sbjct: 21 RDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGKGFVVTTKRAKQQNKPGKSNI 80
Query: 181 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 312
AG RRSLYK++R L YR DL + LR+ASAIL SQ+
Sbjct: 81 SVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAILESQK 124
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 103 bits (248), Expect = 2e-21
Identities = 49/100 (49%), Positives = 65/100 (65%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
+S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA + +R
Sbjct: 25 YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84
Query: 199 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 318
AR +L ++ +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 85 NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 96.7 bits (230), Expect = 2e-19
Identities = 47/105 (44%), Positives = 65/105 (61%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R K +KEPNNVT L++F+YNGL++KK VGV P KG + +K KA KP K +
Sbjct: 19 RSQGKTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGKGVVITTRKNKAANKPGKIMN 78
Query: 181 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 315
+ +RR+L ++ + N+YR DL +RRA AILRSQ+P
Sbjct: 79 KITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRACAILRSQKP 123
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 96.3 bits (229), Expect = 3e-19
Identities = 46/99 (46%), Positives = 61/99 (61%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
F+ EPNNV N +SF++NGL++KK VGV D KG K++K KPAK +R
Sbjct: 30 FTTEPNNVMNKNSFKFNGLVNKKVVGVSSAADNKGVLFKTKRSKVVSKPAKMFVRATLSK 89
Query: 199 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 315
RR+ +K+ L+ YR DL + +RRASAIL SQRP
Sbjct: 90 DRRRAFKSIKKNLECTEYRPDLAELAVRRASAILSSQRP 128
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 73.3 bits (172), Expect = 2e-12
Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R K FS +P N +++ R+ G I K+A+ V + KG T VY K KPAK L
Sbjct: 22 RNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGKGVTFVYLAHKGATKPAKRLK 81
Query: 181 RRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRASAILRSQRPI 318
R G RR++ ++ +K +YR DL + RRASAIL+SQR I
Sbjct: 82 RVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAILKSQRAI 128
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 69.7 bits (163), Expect = 3e-11
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPF-- 192
FS++P N+ N HSF+Y G + KA+G V+ + G V+ KK+ ++P KN +R F
Sbjct: 35 FSRDPLNLQNKHSFKYAGYANTKAIG-VQPTENGGVVVLTKKSGNAQQPGKNAVRVTFGP 93
Query: 193 KAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 315
KA R+ V N YR DL + + R SAI RSQ+P
Sbjct: 94 KASTRKIYKGVADKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 69.3 bits (162), Expect = 4e-11
Identities = 34/82 (41%), Positives = 46/82 (56%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
FS++P N+ N + FRY G +HKKA+G+ E KG V K KPAK + R F
Sbjct: 25 FSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGKGVVVTTKNVAKDHKPAKAVTRTKFVR 84
Query: 199 GARRSLYKVKRLLKANHYRTDL 264
G RR+L K++ L YR +L
Sbjct: 85 GRRRTLQKIRNLTCKQKYRREL 106
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 68.5 bits (160), Expect = 7e-11
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +1
Query: 1 RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
R K FS+EP N+ ++S YNGL + KAVGV D K V KK PA+++I
Sbjct: 14 RGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKKTGKKNLPAQSVI 73
Query: 181 RRPFKAGARRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQR 312
+ K G R + K V+ L+K + R K RRAS +LRS R
Sbjct: 74 KTTIKRGGARGIVKSVQGLVKGRNAR--FAKLAARRASQLLRSVR 116
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 66.5 bits (155), Expect = 3e-10
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPF-K 195
FS++P N+ N SF+Y G + KAVG V+ + G V+ KK ++PAKNL+ +
Sbjct: 35 FSRDPLNLQNKQSFKYAGYANTKAVG-VQATENGGVVVITKKPGNPQQPAKNLVSVSWGP 93
Query: 196 AGARRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 315
A R +YK V N YR DL + + R SAI RSQ+P
Sbjct: 94 NAATRKIYKAVASKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 65.3 bits (152), Expect = 7e-10
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
F++EP NV+ ++ R++GL + KAVGV N R + K +KPAK L R+ A
Sbjct: 30 FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88
Query: 199 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 315
A R YK + + YR DL K ++ RASAIL SQRP
Sbjct: 89 NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 62.1 bits (144), Expect = 6e-09
Identities = 35/98 (35%), Positives = 51/98 (52%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
FSKE NN+TN+HS++++GL +KK V + + + K K KP ++ + K
Sbjct: 33 FSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKK 92
Query: 199 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 312
R V + N+YR DL KA L R SAI + R
Sbjct: 93 EFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 60.9 bits (141), Expect = 1e-08
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPF-- 192
FS+EP N+ LHS++Y+GL++ KAVG+ KG + K AK + K +
Sbjct: 28 FSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKGVVITTKNAKQSSSAIKKTVNVATLK 87
Query: 193 KAGARRSLYKVKRLLKANHYRTDLCKATLR 282
K G RR+ V ++ YR DL + R
Sbjct: 88 KGGGRRTAGAVSNVVAKKGYRADLTREPTR 117
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 55.2 bits (127), Expect = 7e-07
Identities = 34/93 (36%), Positives = 52/93 (55%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
F++E N+ N + +Y+GL KAV + + D+K T+ K KAT+KPAK P +
Sbjct: 26 FAREKFNLLNRNCRKYSGLASTKAVDISIS-DKK-VTLTTKIEKATKKPAKAQNAVPLRK 83
Query: 199 GARRSLYKVKRLLKANHYRTDLCKATLRRASAI 297
GAR ++ + N+YR DL KA L + S +
Sbjct: 84 GARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.9 bits (94), Expect(2) = 2e-04
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 73 LIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKAN 246
L +A+GV + + G + KK +++PAK+L + GA R +YK V N
Sbjct: 88 LTSNQAIGV-QATENGGVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKN 146
Query: 247 HYRTDLCKATLRRASAILRSQR 312
YR DL + + R SAI RSQ+
Sbjct: 147 GYRADLRQEAVSRVSAIRRSQK 168
Score = 24.6 bits (51), Expect(2) = 2e-04
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFR 63
FS++P NV N HSF+
Sbjct: 35 FSRDPLNVLNKHSFK 49
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 43.2 bits (97), Expect = 0.003
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP-----AKNLIR 183
FS+E N+ N + +Y+GL + K V + +P G + K KA KP A++ +
Sbjct: 26 FSREKGNLLNKSAHKYSGLANSKVVSI--HPSAAG-GITITKIKADAKPNQVASARSHVT 82
Query: 184 RPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 312
G RR+ YR DL + R SA+LR++R
Sbjct: 83 LKRSTGPRRANKIAAAETAGKGYRADLRAVAVARTSALLRAER 125
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 37.9 bits (84), Expect = 0.11
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 10 DKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRP 189
D S++P + NL + +GL H KAVGV V+ K K KPAK+
Sbjct: 71 DTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSGKICVITKVVKNANKPAKSRHIVE 130
Query: 190 FKAGARRSLYKVKRLLK-ANHYRTDLCKATLRRASAILRS 306
FK + S K + K Y+ + + RASAI R+
Sbjct: 131 FKP-TKSSRAIAKAVSKTVQGYKDEQIYDAIVRASAIKRA 169
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 36.7 bits (81), Expect = 0.26
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRK-PAKNLIRRPFK 195
F+ EP N+ NL++ +Y+GL ++++ + P+ G V K AK T+K + IR P K
Sbjct: 26 FTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNGKLV--KNAKITKKNTGSSTIRCPKK 83
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 36.3 bits (80), Expect = 0.35
Identities = 34/98 (34%), Positives = 44/98 (44%)
Frame = +1
Query: 19 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
FS EP NVT SFR +GL + K + + E+ KG KPA +
Sbjct: 34 FSAEPGNVTAEVSFRASGLANAKTIDIREHDGGKG------------KPAATCDGKKLCG 81
Query: 199 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 312
+ +VK KA R DL KA L R SAI ++ R
Sbjct: 82 SFKSQAGEVKIAAKA---RPDLEKAALARISAINKAGR 116
>UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subunit;
n=2; Bacillus|Rep: Type III restriction enzyme, res
subunit - Bacillus coagulans 36D1
Length = 1068
Score = 34.3 bits (75), Expect = 1.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 34 NNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFK 195
+ V +H R GLI + + + E RKG +++ K T + AK L+R F+
Sbjct: 61 SQVDRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEEAKALLRLAFR 114
>UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 797
Score = 32.3 bits (70), Expect = 5.6
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 31 PNNVTNLHSFRYNGLIHKK-AVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR 207
PN +S NGL+ +K + + K F+V A + L R+ G +
Sbjct: 237 PNLAKPKNSLVLNGLVSEKDGLNNTSDTTDKSFSVTGTSQSAAPEEKFGLSRKVHSGGTK 296
Query: 208 R-SLYKVKRLLKANHYRTDLCKATLRRA 288
R S+ + K L +YRT CK + R A
Sbjct: 297 RESMLRQKSLHLEKNYRTYGCKGSSRTA 324
>UniRef50_Q54XH1 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 901
Score = 32.3 bits (70), Expect = 5.6
Identities = 26/100 (26%), Positives = 44/100 (44%)
Frame = +2
Query: 53 TPSGTTA*FTRKPLVSWRTLTGRDSQ*CTRKQRLPESPLKT*SAVHSRLVPGGHCTK*RG 232
+P + + ++K S + T + SQ + Q+ +SPLK S ++ +
Sbjct: 4 SPQKSQSQTSQKSQTSQTSQTSQKSQKSQKSQKSQKSPLKF--GTQSEILISDDEDEIES 61
Query: 233 C*RLTTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPS 352
T QT A+ P+VV+ P P SK + QP P+
Sbjct: 62 S---KTPLQTQAQQPYVVISPDQTPYTQSKTQTQTQPTPN 98
>UniRef50_Q4T6N5 Cluster: Chromosome 9 SCAF8684, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 9 SCAF8684, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 966
Score = 31.9 bits (69), Expect = 7.4
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 375 LSAY-KLFRLGCGCLSLFCFDGPLG 304
L AY + R+GC C+ L C+DGP G
Sbjct: 360 LEAYARCLRMGCRCIELDCWDGPEG 384
>UniRef50_Q4RSQ2 Cluster: Chromosome 12 SCAF14999, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 12 SCAF14999, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1404
Score = 31.9 bits (69), Expect = 7.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 4 PADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 120
P + P SK+PN + R +G + KK G V++PDR+
Sbjct: 388 PNETPPSKKPNIKAEKQNRRPSGSVRKKEDGCVKSPDRE 426
>UniRef50_P19174 Cluster: 1-phosphatidylinositol-4,5-bisphosphate
phosphodiesterase gamma-1; n=65; Eumetazoa|Rep:
1-phosphatidylinositol-4,5-bisphosphate
phosphodiesterase gamma-1 - Homo sapiens (Human)
Length = 1290
Score = 31.5 bits (68), Expect = 9.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 375 LSAY-KLFRLGCGCLSLFCFDGPLG 304
L AY + R+GC C+ L C+DGP G
Sbjct: 350 LEAYARCLRMGCRCIELDCWDGPDG 374
>UniRef50_P03203 Cluster: Epstein-Barr nuclear antigen 4; n=6; Human
herpesvirus 4|Rep: Epstein-Barr nuclear antigen 4 -
Epstein-Barr virus (strain B95-8) (HHV-4) (Human
herpesvirus 4)
Length = 938
Score = 31.5 bits (68), Expect = 9.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 239 RLTTTAQTYARLPFVVLQPSSAPRGPSKQKR 331
+L+++A + A+ P+ V+QPS P P+KQ R
Sbjct: 584 QLSSSAPSCAQTPWPVVQPSQTPDDPTKQSR 614
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,037,330
Number of Sequences: 1657284
Number of extensions: 7825109
Number of successful extensions: 19757
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19744
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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