Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I07
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    65   4e-12
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.63 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   2.5  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   7.8  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.8  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 65.3 bits (152), Expect = 4e-12
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = +1

Query: 19  FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 198
           F++EP NV+  ++ R++GL + KAVGV  N  R    +     K  +KPAK L R+   A
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88

Query: 199 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 315
            A  R  YK +   +    YR DL K ++ RASAIL SQRP
Sbjct: 89  NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVR 31
           +HYC S  +  LHDT   LV       G + S +++
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIK 286


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 348 GCGCLSLFCFDGPLG 304
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 95  PTAFL*IKPLYLKEWRLVTLFGSLLN 18
           PT+F  IKPL  + +R+  L+  LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 78  SQESRWCRGEP*QEGIHSSVQESKGY 155
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,013
Number of Sequences: 5004
Number of extensions: 29706
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)