Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I07
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     64   4e-11
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     63   1e-10
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     62   2e-10
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    29   2.5  
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   7.7  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
 Frame = +1

Query: 19  FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNLIRRPF 192
           FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K  +  KPA    +   
Sbjct: 33  FSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLYHKSVM 91

Query: 193 KAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 306
           +   R+    VK  +  N+YR DL K  L R SA+ RS
Sbjct: 92  RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +1

Query: 19  FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLIRRPFK 195
           F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 196 AGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 306
              R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +1

Query: 19  FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLIRRPFK 195
           F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 196 AGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 306
              R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 266 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 361
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 313 ASGSGGWLKHDEG*PCIGLCGSG*P 239
           A GSGGW +  +G      CG+G P
Sbjct: 28  AEGSGGWRRRRDGHVARARCGAGEP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,252
Number of Sequences: 37544
Number of extensions: 233483
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)