Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I07
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    30   0.74 
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   2.3  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   5.2  

>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +1

Query: 1   RPADKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 180
           RP+D    K+PN+     +      IH++A+   E    K   + Y K    RK A+ L 
Sbjct: 638 RPSDDEEEKKPNDKETASTPTNRRYIHERAI-FQELTHLKRMQIQYGKVLIARKNARALF 696

Query: 181 RRPFKAGARRSLYKV 225
           R  +  G  +   KV
Sbjct: 697 RNYYHPGTEQVQEKV 711


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 248 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 349
           +T  T  R P ++  PSS P GPSK    + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 22  SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 138
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 22  SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 138
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 22  SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 138
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,791,962
Number of Sequences: 27780
Number of extensions: 178810
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)