Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I06
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 38 0.002
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.1
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 3.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 27 4.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 7.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 9.5
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 9.5
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 37.9 bits (84), Expect = 0.002
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Frame = +2
Query: 398 PKLPSMSVKASEGPTGSLE--PGARFDQNWSIVNTGTEQWPGCCRLIQAGGESL--GATP 565
PK+ + K E LE PG F + W I NT + WP + GG+ L G P
Sbjct: 270 PKVLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNP 329
Query: 566 VYLPPLPVGH-----STTVTLKLVAPSTSGTHKSFFHLVTDKG 679
P H + TV LK+ S +FF++ +D G
Sbjct: 330 YSFPITSSVHPGEDVNFTVALKVPEKSNKEIFTAFFNICSDDG 372
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 308 SLNYNTASFFLDMSNWNLQAAI 373
S++Y TA +L +NWN+Q A+
Sbjct: 1165 SVSYQTAEQYLSGNNWNVQNAL 1186
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 263 DREELIKQMQKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTSPK 403
DRE+++K+ +++ + FFL+ +NWN + A + P+
Sbjct: 2 DREDILKEFCNR--NNIDVSQGRFFLESTNWNYELATALLHEVIPPE 46
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 380 YLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQW-PGCCRLIQAGGES 550
Y+ Y P M KA+ P+ L PG W + T W G + I G E+
Sbjct: 215 YMGYYIHTCPKMKYKATYSPSYLLNPGT---NKWIPIENFTSLWNTGAPKYISFGDEN 269
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/107 (20%), Positives = 45/107 (42%)
Frame = +2
Query: 323 TASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGT 502
T + +++N Q+ Y YTS LP+ ++ S P ++ + N + +
Sbjct: 145 TTELIIPTTSYNNQSHTLIYSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSK 204
Query: 503 EQWPGCCRLIQAGGESLGATPVYLPPLPVGHSTTVTLKLVAPSTSGT 643
P + + + + Y P +T+ T+++V P T+GT
Sbjct: 205 TTSPTAGTITET---IVSGSVGYTSTFPASGTTSGTVEVVEP-TAGT 247
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 546 SPPACINLQQPGHCSVPVLTILQF*SKRAPGSKLP-VGPSDAFTDIEGSFGDV 391
+PPA ++ P +VPV +++ +++ P S P PS + SF V
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV 1529
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 568 LFTTSSCWTFHNSYIKISSPFNFWN 642
LFTTS + H + +K++SP N N
Sbjct: 868 LFTTSKVYKQHGNIMKVASPENSSN 892
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 366 LLYVAI*IIHHQSFLQCQ*KHLKVQLVVWNL 458
LLY+ + ++S L + KHLK QL+V NL
Sbjct: 726 LLYMLEDVSRNKSQLLAEKKHLKSQLMVANL 756
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 266 REELIKQMQKLLGPSLNYNTASFFLDMSNWNLQAA 370
R+ L+K + K++ + N ASFF +S +L+AA
Sbjct: 28 RKFLVKLLSKIVIGASESNVASFFAFVSEKSLEAA 62
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 230 DFDQFLQVLRRHQRPF*FTTFYIYE*IRNKYLTVCKIIILQ--LSGIMT 90
D D F +L P F FY Y R ++ + +IIL+ L+G+++
Sbjct: 366 DLDTFTAILYNDNSPQPFVNFYSYLLGRGGHVVMNVVIILEIFLNGVVS 414
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 557 ATPVYLPPLPVGHSTTVTLKLVAPSTSGTHK 649
+TPV++PP ST +T + +P G H+
Sbjct: 20 STPVHIPPPINSESTRITPQHGSPPRFGDHR 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,436
Number of Sequences: 5004
Number of extensions: 59981
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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