Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I06
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 54 1e-07
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 49 4e-06
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 32 0.46
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 31 1.1
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 29 5.7
06_03_0592 + 22585546-22588573,22588680-22589032 29 5.7
04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144 28 7.5
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 28 9.9
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 28 9.9
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 54.4 bits (125), Expect = 1e-07
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 449 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGESLGA---TPVYLPP--LPVGHSTTVTL 613
+ P F + W + N G+ WP +LI GG+ P+ +P PV V +
Sbjct: 518 MAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAV 577
Query: 614 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVE 721
VAP+ G + S++ L + G++ G +WV + VE
Sbjct: 578 DFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 613
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Frame = +2
Query: 437 PTGS-LEPGARFDQNWSIVNTGTEQWP-GCCRLIQAGGESLGATP-----VYLPPLPVGH 595
P G+ + P F + W I N G+ WP G C L GG + + P+
Sbjct: 543 PDGTVMAPSTPFTKIWRIHNNGSSMWPYGTC-LTWVGGHLFARNSSVKLGISVDGFPIDQ 601
Query: 596 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAAL 763
V + V P+ G + S++ L + G+ G +WV + VE + + +Q AA+
Sbjct: 602 EIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAI 657
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 32.3 bits (70), Expect = 0.46
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +2
Query: 392 TSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGESLGATPVY 571
T+PK S P L G +NW V+ G ++ CR A + A PV
Sbjct: 8 TTPKSGGESGAPRRRPPPQLGSGRA--KNWRPVSAGHQEPTSACRQELAAAAAAAALPV- 64
Query: 572 LPPLPVGHST 601
PP+P G ST
Sbjct: 65 -PPVPRGSST 73
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 296 LLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTSPKLPS 412
L G LNY++ F +S AA+ C LDYT P P+
Sbjct: 49 LAGILLNYDSTWFTQFLSRPTAAAAVSCRLDYTVPPPPA 87
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 407 PSMSVKASE-GPTGSL-EPGARFDQNWSIVNTGTEQWP----GCCRLIQAGGESLGATPV 568
P+++V+ + G SL E GA Q W T ++QWP + G+ GA
Sbjct: 46 PTVAVRGDDNGAAVSLAEVGATTGQWWPCTATASQQWPRGGDDDGPAVAVRGDEDGAA-- 103
Query: 569 YLPPLPVGHSTTVTLKLVAPSTSG 640
+ P VG +TT L A +T+G
Sbjct: 104 -MSPAEVGAATTGQWWLCAATTTG 126
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 CMNTTDREELIKQMQKLLGPSLNYNT-ASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVK 424
C T DR+ L+ +L GPS ++ ++ L+ NW+ + C + P++ ++ +
Sbjct: 28 CNETDDRQALLCFKSQLSGPSRVLSSWSNTSLNFCNWD---GVTC-SSRSPPRVIAIDL- 82
Query: 425 ASEGPTGSLEP 457
+SEG TG++ P
Sbjct: 83 SSEGITGTISP 93
>04_03_0495 + 16545795-16546029,16546125-16546360,16546863-16547144
Length = 250
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 260 TDREELIKQMQKLLGPS-LNYNTASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEG 436
T R + K + ++ PS + +++ L+ N +L C + ++ + +S G
Sbjct: 125 TKRPKKSKSIYEIGPPSWIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRG 184
Query: 437 PTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAG 541
+ S ++W + + + GCC L+ +G
Sbjct: 185 RSSSSS-----SRSWEVACSVNKNGYGCCNLLPSG 214
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 326 ASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEGP 439
A+FFL+ NW L++A+ + D + + A++ P
Sbjct: 33 AAFFLESHNWALESAVRSFYDSADGDASAAAADAADPP 70
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 416 SVKASEGPTGSLEPGARFDQNWSIVNTGTEQWP 514
S +AS T S+ G+ FD +W++V+ G P
Sbjct: 409 SSQASSSGTTSVAAGSAFDSSWTLVSHGQSDDP 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,646
Number of Sequences: 37544
Number of extensions: 356685
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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