Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I06
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    79   5e-15
Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine tr...    30   1.7  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 16/200 (8%)
 Frame = +2

Query: 218 IDQNLLLQFSCMNTTDREELIKQMQKLLGPSL-NYNTASFFLDMSNWNLQAAICCYLDYT 394
           ++ +L+ + S M T DRE LI + ++++ P +  ++ A+F+LD++NWNL  AI  + D  
Sbjct: 4   LENSLISKMSQMTTDDRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQN 63

Query: 395 SPKLP----------SMSVKA---SEGPTGSL--EPGARFDQNWSIVNTGTEQWPGCCRL 529
              L           S +VK     E  +GS    P + F   W +VN G  +WP   RL
Sbjct: 64  GDLLHMEEAFRQTCLSSTVKECTNREAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTRL 123

Query: 530 IQAGGESLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVE 709
               G+ +         L    S  + +++  P+  G  K+ F  VT +    G+++WV 
Sbjct: 124 AFVDGDPIDYEVWKDTVLDPDQSENIEIRISCPAEMGDFKARFQFVTPQNFFFGESIWVI 183

Query: 710 VTVESEMTMALVEQLAALPV 769
           + V          +++A P+
Sbjct: 184 IRVRPLTEAEAAMEVSAQPM 203


>Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 677 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPXSRLEE 790
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84


>Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 677 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPXSRLEE 790
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84


>U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine
           transglycosylase protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 677 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPXSRLEE 790
           G  +GD  W  +T++  MT+ ++  +  +P P + LE+
Sbjct: 47  GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEK 84


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = +2

Query: 410 SMSVKASEGPTGSLEPGARFD----QNWSIVNTG-TEQWPGCCRLIQAGGESLGATPVYL 574
           S S   +  PT ++ PGA        + +IV+T  T   P    L  +   +  +TP+ +
Sbjct: 408 SKSSSPNSTPTTTITPGAPSSTLGSSSSTIVSTTITPSTPKVSTLTLSQSPTPTSTPLVV 467

Query: 575 PPLPVGHSTTVTLKLVAPSTSGTHKS 652
                G S+TV    + PST G   S
Sbjct: 468 SSSSSGSSSTVVTSTITPSTQGVPTS 493


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 GEIDQNLLLQFSCMNTTDREELIKQM 289
           G + +NLL     +NT D  EL+KQM
Sbjct: 139 GRLGENLLHVCMLLNTADMNELVKQM 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,077
Number of Sequences: 27780
Number of extensions: 346612
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)