Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I04
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      34   0.001
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      34   0.001
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.093
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   3.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 365 VETPLLFPSLHRAHSPGHLLKVFPSASITSPTRMDTSPLVMLSPL-PHQCLSRSLVLLPT 541
           + +P     L    SPG ++   PS S+ SP+    SP ++ SPL PH+      V LP 
Sbjct: 681 ISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFD---VKLPP 737

Query: 542 SP 547
            P
Sbjct: 738 PP 739


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 365 VETPLLFPSLHRAHSPGHLLKVFPSASITSPTRMDTSPLVMLSPL-PHQCLSRSLVLLPT 541
           + +P     L    SPG ++   PS S+ SP+    SP ++ SPL PH+      V LP 
Sbjct: 573 ISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFD---VKLPP 629

Query: 542 SP 547
            P
Sbjct: 630 PP 631


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 370  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPV 510
            +P A+    QGS S  S EGVP+    V   +G    G+    SPPV
Sbjct: 1086 DPVALKSAQQGSSS--SSEGVPLKGTAVPPPSGSSGPGSTGSKSPPV 1130


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 476 PLVMLSPLPHQCLSRSLVLLPTSPRTFLSRS 568
           P+V LS     C S  L   PT P T  SR+
Sbjct: 75  PVVSLSTCSMLCGSTQLWPQPTGPVTLASRA 105


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 262 VKFGNEINPDGSYTYFY 312
           +KFG + +P+G Y   Y
Sbjct: 429 IKFGRKADPNGDYIRKY 445


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,711
Number of Sequences: 336
Number of extensions: 4466
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)