Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I02
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 122 8e-29
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 28 1.3
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 27 2.3
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 27 2.3
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 3.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.0
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.0
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 5.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.0
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 7.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.0
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 9.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 9.3
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 9.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.3
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 122 bits (293), Expect = 8e-29
Identities = 59/142 (41%), Positives = 88/142 (61%)
Frame = +2
Query: 359 RNWVIRGIFTWLMIGGFCLLIYGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFR 538
+N++ R I+T+L++G F + G +++ V VQ+ ++E+I I R LPW R
Sbjct: 50 QNFITRTIWTFLLLGIFFTALAMGHFWVVLLVTIVQIGVYKEVIAIASVPSREKDLPWTR 109
Query: 539 SLSWYFLLTSNYFFYGENLIDYFGVVINRTDYLKFLVTYHRFISFSLYCVGFVWFVLSLV 718
++WYFL+T+ Y+ YGE++ YF + ++ LV +HRFISF LY +GFV FV SL
Sbjct: 110 FINWYFLMTTLYYAYGESIYAYFHHLFIMDSFMLPLVLHHRFISFMLYIIGFVLFVASLK 169
Query: 719 KRYYMRQFXLFAWTHVALLIVV 784
K Y QF F WTH+ LL+VV
Sbjct: 170 KGNYKFQFSQFCWTHMTLLLVV 191
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 167 RQRRGDGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLP 295
R R D D N+ + +VE H D E + VDE ++P
Sbjct: 531 RARDKDADPNKSLSCSVEDKHYDLHSAVAEENEEVDEELLNVP 573
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 190 WKPENR-SCCRVGSCRL*RGESPRREVCGRASEVLTARH 303
WKP++ S C SC + G RR C R ++ A H
Sbjct: 151 WKPDSDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFCALH 189
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 200 KIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEIL 325
KI A ++ HV E+ L+ K +DE+ SL + ++ IL
Sbjct: 120 KINAKTQTLHVSWALERFLDSKRIDEMKYSLDRFIERCSNIL 161
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +2
Query: 446 ITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWYFL--LTSNYFFYGENLIDYFGVVI 619
+ C+ + E + N +++ +HG+PW YFL L N F I V +
Sbjct: 895 VVTFCILIMAVE-VKNFDNSLFNLHGIPWGEWNFRYFLHTLVENKFLAW--AIALAAVSV 951
Query: 620 NRTDYLKFLVTYHRFISFSLYCVGFVWFVLSLVKRYYMRQFXLFAWTHV 766
T Y+ + +R + Y +G+ W V+++ +Y F + W +
Sbjct: 952 FPTIYIPVI---NRDVFKHTY-IGWEWGVVAVAVMFYF--FYVEIWKSI 994
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 3.0
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +2
Query: 245 EKVLEEKYVDELAKSLPQGTDKTPEILDSALSGLSTRWRNWVIRG-----IFTWL--MIG 403
E + KY+ + + P+ + P + D L GL + ++ I TW+
Sbjct: 81 ESLKSGKYLKPVDPNAPKAAN--PLMDDKTLEGLMESMKGNMLMVVPQTIIMTWINEFFS 138
Query: 404 GFCLLIYGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWYFL 559
GF LL PL L F+ I G A + + W S+SWYFL
Sbjct: 139 GFILLKLPFPLTLR----------FKSIFQSGVATQDLD-VQWVSSISWYFL 179
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 227 HVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILD 328
HV S EK++EE+ +DE+++S + + P+ +D
Sbjct: 572 HV-STPEKIVEERSIDEVSQSNTPSSKQLPQSVD 604
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/71 (19%), Positives = 31/71 (43%)
Frame = +2
Query: 155 MSEIRQRRGDGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILDSA 334
+ + R+ +G + + + VDS ++ L ++++ +P+G + +
Sbjct: 675 LGNLLARQFEGRHSTGVAKQITKQRVDSHQDLELRAAVMNDILDMIPEGIRQGKS--KTI 732
Query: 335 LSGLSTRWRNW 367
L LS WR W
Sbjct: 733 LQHLSEAWRCW 743
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 317 EILDSALSGLSTRWR--NWVIRGIFTWLMIGGFCLLIYGGPLALMI 448
+I+ SA++ L W+ N VIR W ++ +I+GG LA +
Sbjct: 319 QIMGSAVAALFLDWQRFNRVIRARVGWGLVFVLICVIWGGGLAFQL 364
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 443 MITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLS 547
+++ + + +KC E + YA+Y + P+F +S
Sbjct: 349 LVSYVHLLLKCLENPFDHHYAIYSKYATPYFHGIS 383
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 422 YGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWY 553
YG + + ++CV+ +C +I+ + VH L L W+
Sbjct: 148 YGLSILSIHALMCVECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 203 IEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTP-EILDSALSGLSTRWRNWVIR 376
++ E D V +EEEK E + LP+ + K P E +DS ++G S N V++
Sbjct: 584 MQTDAEGDIVQNEEEKESVEVEEGKHKNDLPKVSPKPPTEGVDSEVNGESLVQVNKVLK 642
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 422 YGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWY 553
YG + + ++CV+ +C +I+ + VH L L W+
Sbjct: 148 YGLSILSIHALMCVECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 440 EREVHRRSANRNLRSSTM*IFHESPSSSIS*IVQKAQS 327
E ++ RR NRN +SS FH+ +S S + K +S
Sbjct: 239 EFQLERREQNRNQKSSKQRPFHKPGNSLASRLGSKPKS 276
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 188 DGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDK 310
DG +KIE + H D+ + + +A SL + T+K
Sbjct: 2 DGKRKIEHTADGTHYDATSNVKRKPIFPPFIADSLSEATEK 42
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 179 GDGDGNQKIEAAVESDHVDSEEEKVLE---EKYVDELAKSLPQGTDKTPE 319
GDGDG + E+D SEEE+ E E+ +E A + ++ PE
Sbjct: 206 GDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAAEEKPE 255
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = -2
Query: 155 FLILS*ALYHCTYLIAGTSFTRVRLIHFNSIVRKNRRCFPPSCQMKNP 12
F+++S L ++ G + V + + + N +PP C M P
Sbjct: 1273 FIMISMQLLMLVFVNLGAMYHTVEICDYQAGAAINASLYPPGCYMLKP 1320
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 179 GDGDGNQKIEAAVESDHVDSEEEKVLEEKY 268
GDGDG+ +IE D+ SE + LE+ +
Sbjct: 116 GDGDGDVEIENPEVDDYQVSEHDFGLEDDF 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,748
Number of Sequences: 5004
Number of extensions: 63174
Number of successful extensions: 260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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