Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_I02
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656... 100 3e-21
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 34 0.11
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594... 33 0.26
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 30 2.4
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 30 2.4
01_01_0834 + 6522709-6523452 29 4.2
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 5.5
07_01_0324 - 2267568-2267625,2267892-2268005,2268067-2268170 29 5.5
09_04_0166 + 15278511-15278862,15279790-15280049,15280153-152802... 28 7.3
08_02_0694 - 20120864-20121223 28 9.7
02_05_0477 - 29339649-29340253,29340880-29341492 28 9.7
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 9.7
>01_06_0772 -
31864564-31864653,31864733-31864816,31865547-31865603,
31865700-31865828,31866704-31866790,31866856-31866933,
31867150-31867306,31868000-31868141,31868835-31868986,
31869118-31869371,31869819-31869896
Length = 435
Score = 99.5 bits (237), Expect = 3e-21
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Frame = +2
Query: 353 RWRNWVIRGIFTWLMIGGFCLLIYGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPW 532
++++ +IR T MIGGF L++Y G L + V+ +Q+ +E+ N+ LP
Sbjct: 46 KYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPG 105
Query: 533 FRSLSWYFLLTSNYFFYGENLIDYFGVVINRTDYLKF-----LVTYHRFISFSLYCVGFV 697
FR L+W+F T+ F YG L + +D+L + L+ Y FI + LY GFV
Sbjct: 106 FRLLNWHFFFTAMLFTYGRFLSRQLVNTVT-SDHLLYKVVSGLIKYQMFICYFLYIAGFV 164
Query: 698 WFVLSLVKRYYMRQFXLFAWTHVALLIV 781
WF+L+L K+ Y QF +AWTH+ LL V
Sbjct: 165 WFILTLKKKTYKYQFKQYAWTHMILLTV 192
>02_05_0924 - 32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 34.3 bits (75), Expect = 0.11
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Frame = -3
Query: 754 SEQXELPHVVAFDQRQHEPNEADAVQAERYETVVRHQKLEVVRSVDDNTKVVNQVFP-IE 578
S + ++PH ++ +Q + E AE E + + ++ DN + +Q+
Sbjct: 726 SLERQIPHSISNNQGMADKLELTPSYAELLEQL-NEKSFDLEVKAADNRVIQDQLNEKTT 784
Query: 577 EIIGSQ*EVPRQGTEPWETMDTVDCISNVDDLFKTLHLNAEDRNHESERSTVDQQT--ET 404
E + Q EV + ++T+ D +SN + K +N E NH + +V ++ ET
Sbjct: 785 ECMELQEEVAHLKEQLYQTLQAKDSLSNSIMMQKNAGINHETDNHADQELSVPREVPGET 844
Query: 403 SDHQP 389
S +P
Sbjct: 845 SPKEP 849
>04_04_0014 +
22158441-22158669,22158782-22158878,22159264-22159461,
22159907-22160141,22160383-22160710,22160798-22161068,
22161169-22161424,22161508-22161964,22162096-22162286
Length = 753
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 671 FSLYCVGFVWFVLSLVKRYYMRQFXLFAWTHVALLIVV 784
F+ +GFV +L + YY+R+ +FAW H+ L+ V+
Sbjct: 576 FAASTLGFV-LAYALAQAYYVRRLNVFAWWHLGLVFVL 612
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 463 NAEDRNHESERSTVDQQTETSDHQPCKYSTNHP 365
+ +D +H +ERSTV +Q+ ++HQ + N P
Sbjct: 249 SVKDESHHNERSTVKKQSAGTEHQDGREMKNIP 281
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 485 IINIGYAVYRVHGLPWFRSLSWYFLLTSNYFFYGENLIDYFGVVIN 622
IIN+ V +P++ SLS FL++ ++F YG L D+F + N
Sbjct: 996 IINLVIRTKSVEYMPFYLSLSM-FLMSVSFFAYGVLLHDFFIYIPN 1040
>01_01_0834 + 6522709-6523452
Length = 247
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -1
Query: 192 PSPSPRRCLISLISNP*LSTLPLHL 118
PSP+PRR LI LIS L+ LP HL
Sbjct: 40 PSPAPRRLLILLISPTSLALLP-HL 63
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 152 EMSEIRQRRGDGDGNQKIEAAVESDHVDSEEEKVLEEK 265
+ E + DG+G++++E E D VD EEE EEK
Sbjct: 116 DAEEKSEEEEDGEGDEELE---ELDDVDDEEESEEEEK 150
>07_01_0324 - 2267568-2267625,2267892-2268005,2268067-2268170
Length = 91
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 149 LEMSEIRQRRGDGDGNQK 202
+E ++R+R GDGDGNQ+
Sbjct: 1 MEEEDVRRRGGDGDGNQQ 18
>09_04_0166 +
15278511-15278862,15279790-15280049,15280153-15280251,
15280788-15280961,15283009-15283638
Length = 504
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 179 GDGDGNQKIEAAVESDHVDSEEE 247
GDGD ++++ A +DHVD +++
Sbjct: 480 GDGDDEERLQLAKFADHVDDDDD 502
>08_02_0694 - 20120864-20121223
Length = 119
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 167 RQRRGDGDGNQKIEAAV 217
R+ RGDGDG +++EA V
Sbjct: 29 REERGDGDGRRRLEAPV 45
>02_05_0477 - 29339649-29340253,29340880-29341492
Length = 405
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 179 GDGDGNQK---IEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILDSALSG 343
G DG +K ++AAV D D+ ++ + E +D A LP+ T T +D+A+SG
Sbjct: 114 GGSDGTRKRRRVKAAVAGDSGDAGTDEAVVE-LLD--APPLPEATRATRADIDAAISG 168
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 170 QRRGDGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILDS 331
Q GDG+ ++ ESD ++ + ++ + E+A ++P+G+ E++ S
Sbjct: 187 QNTGDGEVIFDVDTDEESDMFYDQDWEEYDDMEIKEVADTIPEGSSVLDELVYS 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,770,764
Number of Sequences: 37544
Number of extensions: 413142
Number of successful extensions: 1478
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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