Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_I02
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23877| Best HMM Match : CTP_transf_1 (HMM E-Value=7.1e-16)         134   1e-31
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        33   0.20 
SB_21377| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.80 
SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)               30   2.4  
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)               30   2.4  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               29   3.2  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     29   5.6  
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_20718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               28   9.9  
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_23877| Best HMM Match : CTP_transf_1 (HMM E-Value=7.1e-16)
          Length = 316

 Score =  134 bits (323), Expect = 1e-31
 Identities = 55/94 (58%), Positives = 71/94 (75%)
 Frame = +2

Query: 323 LDSALSGLSTRWRNWVIRGIFTWLMIGGFCLLIYGGPLALMITVLCVQVKCFEEIINIGY 502
           L   L  L  +WRNW IRG F+ +M+ GF L++Y GPL L+I + C+Q+KCF EII+IG+
Sbjct: 9   LPGVLGNLQPKWRNWWIRGAFSAVMLSGFGLIMYTGPLGLIILIQCLQIKCFHEIISIGH 68

Query: 503 AVYRVHGLPWFRSLSWYFLLTSNYFFYGENLIDY 604
             Y+ H LPWFRSLSWYFLL SNYFFYGE++ D+
Sbjct: 69  KKYQKHNLPWFRSLSWYFLLGSNYFFYGESITDF 102


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 586  PIEEIIGSQ*EVPRQGTEPWETMDTVDCISNVDDLFKTLH-LNAEDRNH-ESERSTVDQQ 413
            P E +  SQ  +P+  T    T  + D  +N D+ + T+  L  + R H  + + T+ Q 
Sbjct: 863  PREHVRNSQRTMPQTTTT--RTQQSADYATNHDNTYATVSGLCHKPRQHVRNSQRTMPQT 920

Query: 412  TETSDHQPCKYSTNH 368
            T T   Q   Y+TNH
Sbjct: 921  TTTRTQQSADYATNH 935



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 448  NHESERSTVDQQTETSDHQPCKYSTNH 368
            NHE+ + T+ Q T T   Q   Y+ NH
Sbjct: 934  NHENTQRTMPQTTRTRTQQSADYAINH 960


>SB_21377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 340 WTI---YEMEELGDSWNIYMVDDRRFLFADLRW 429
           WTI   + +  + D WN++ +DD+ +L+ D +W
Sbjct: 53  WTIDDKWNLWTIDDKWNLWTIDDKWYLWTDDKW 85


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 422 YGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWYF 556
           +G  L+ +IT++C+ V      INIG+    +HG  W +   +YF
Sbjct: 271 FGEQLSKVITIICIAVWA----INIGHFNDPIHGGSWLKGAIYYF 311


>SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
          Length = 490

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 626 TDYLKFLVTYHRFISFSL-YCVGFVWFVLSLVKRYYMRQFXLFAWTHVALL 775
           T+YL++L     FI  +L  C   VW  ++++   +   F +F WT  A++
Sbjct: 2   TNYLRYLRKLPAFIYGTLCICAILVWTAIAILTLPFYFLFRVFKWTQAAVV 52


>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
          Length = 535

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 626 TDYLKFLVTYHRFISFSL-YCVGFVWFVLSLVKRYYMRQFXLFAWTHVALL 775
           T+YL++L     FI  +L  C   VW  ++++   +   F +F WT  A++
Sbjct: 2   TNYLRYLRKLPAFIYGTLCICAILVWTAIAILTLPFYFLFRVFKWTQAAVV 52


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 182 DGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTP 316
           DG+G Q    +   D  + EEE+  EEK + +  K       KTP
Sbjct: 194 DGNGEQSKSGSESDDDEEEEEEEEKEEKKLTQKKKGKTPEQKKTP 238


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 194 NQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTD 307
           N  +++ +E D  D+E+E  +E+   D + + LPQG +
Sbjct: 274 NHSLDSEMEGDDHDNEDEGSIEKLIEDIVDRDLPQGIE 311


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 233 DSEEEKVLEEKYVDELAKSLPQGTDKTPEILDSALSGLSTRWRNWVIRGI 382
           +++EEK+ EEK ++EL + + +G     ++L  A+       R W+ RG+
Sbjct: 73  ETDEEKITEEKIINELYQ-IAKGIKS--DVLRKAIEDYRLDRRGWLKRGL 119


>SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1380

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
 Frame = -3

Query: 727  VAFDQRQHEPNEADAVQAERYETVVRHQKLEVVRSVDDNT--KVVNQVFPIEEIIGSQ*E 554
            V+    Q+   + ++   E    V+  +K  V ++ +D     V   V  + E  G   E
Sbjct: 845  VSIQYNQYLKKDEESSSVEEPRLVIGVEKDRVSKNDNDANLATVAGVVHTLNE--GVDRE 902

Query: 553  VPRQGTEPWETMDTVDCISNVDDLFKTLHLNAEDRNHESERSTVDQQTETSDHQPCKYST 374
            +P   T P  T D      N     K      +    +++R  + Q+   +  Q C+   
Sbjct: 903  LPSDRTTPMSTNDGDTSKENQQLFHKCTQAQKKKAKRKNQRPKISQRKSRTGKQECQKKE 962

Query: 373  NHP 365
            N P
Sbjct: 963  NEP 965


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
 Frame = +2

Query: 167 RQRRGDGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILD------ 328
           R++  DGD + K E A+  D       + +EEK+V   A  L +       +LD      
Sbjct: 172 RRQHLDGDKSTKDELAIYYDEQVRPLLQQMEEKFVQRNASELCRDCLTLWNVLDKRGMIG 231

Query: 329 SALSGLSTRWRNWVIRGIFTWLMIGGFCLLIYGGPLALMITVLCVQVKCFEEIINIGYAV 508
            +    S R R  +++ +F +L I    L++  G L L + V          I NI   V
Sbjct: 232 KSSGSASARRRGEILKTVFKFLDINDPKLILRLGRLILSMKV------TGNNITNICMVV 285

Query: 509 YRV 517
           YR+
Sbjct: 286 YRL 288


>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 386 TWLMIGGFCLLIYGGPLALMITVLCVQVKCFEEIINIGYAVYRVHGLPWFRSLSWYFLLT 565
           T +++GG  L+++   + +   +L V+ KC E ++NI +    +       +  W + L 
Sbjct: 250 TAVIVGGSFLVLFCPVVVVFSLLLTVEDKCMELLLNIVWQWIALVSFTHSATNPWVYCLR 309

Query: 566 SNYF 577
           S  F
Sbjct: 310 SRQF 313


>SB_20718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 777 ISRATWVQANRXNCRM**RLTRDSTNQTKPTQYKLNDMK--RWY-VTRNLR 634
           +  A+W+QAN+ N +       D  N  K T  KL+D K  +W+ V  NL+
Sbjct: 295 VPEASWLQANKDNPK---ARVPDEKNDNKWTYIKLDDFKVPKWHEVAFNLK 342


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 182 DGDGNQKIEAAVESDHVDSEEEKVLEEK----YVDELAKSLPQG 301
           DGD N   +  V  D  D E+++ + E+    YVDE    +P G
Sbjct: 369 DGDLNDNDKRGVNEDEDDDEDDEDIPEELKLDYVDERTGEIPAG 412


>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 182 DGDGNQKIEAAVESDHVDSEEEKVLEEKYVDELAKSLPQGTDKTPEILDSALSGLST 352
           D D N K     +S   D +E    + + VD+L++  P+  D   +  D  LS  +T
Sbjct: 365 DSDANVKKRLVGKSPKDDDQERIAGDTEPVDDLSQLSPENRDDIEQDRDDVLSDYNT 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,582,919
Number of Sequences: 59808
Number of extensions: 487090
Number of successful extensions: 1602
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)