Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H24
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   8.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
 Frame = -2

Query: 327 PDGKLCTTNVPSSRTKPMYSPPLT*TRVSN--------CQLLLLGSSGGNTRPSITC-PI 175
           P G LC   +P  +  P+  PP+    + N         QLL +      + P+ TC P+
Sbjct: 166 PAGFLCNNYLPLPQVPPLPLPPIFAPTMINPSAICESAAQLLFMNVQWVRSIPAFTCLPL 225

Query: 174 SSSVRSLAQ 148
           S  +  L +
Sbjct: 226 SDQLLLLEE 234


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 VHTSSKSYTQTTCTNPCVSKSILKANT 407
           V T+SKS   T  T+  +   ILK NT
Sbjct: 151 VKTTSKSLVPTPVTHIFLQNLILKENT 177



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 405 TELEKSITFKLHKSFKYLTR*G*NQSPNSDIFKFGNNGGSLTSCSTQ 545
           TEL KS+   L    +YL      Q+ N +I K      +  SCST+
Sbjct: 742 TELSKSLEGLLENVAQYLQIENVEQTLNHEIKKVIPGRITQKSCSTK 788


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 481 DWFHPQRVRYLNDL*SLNVIDF 416
           D F+PQR+  L D  +L   DF
Sbjct: 346 DGFNPQRLGSLVDFINLQAFDF 367


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 502 LKISEFGDWFHPQRVRYLNDL 440
           + +S+  +WF  +R+RY  ++
Sbjct: 272 ITVSQVSNWFGNKRIRYKKNI 292


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
 Frame = -2

Query: 327 PDGKLCTTNVPSSRTKPMYSPPLT*TRVSN--------CQLLLLGSSGGNTRPSITC-PI 175
           P G LC    P  +  P+  PP+    + N         QL+ +      + P+ TC P+
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNVQWVRSIPAFTCLPL 225

Query: 174 SSSVRSLAQ 148
           S  +  L +
Sbjct: 226 SDQLLLLEE 234


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 348 TISTTYEPDGKLCTTNVPSSRTKPMYSPP 262
           T++T +        TN P   TKP  +PP
Sbjct: 172 TLTTKFTTKPSTKPTNKPVVVTKPPQAPP 200


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 327  PDGKLCTTNVPSSRTKPMYSPPLT 256
            PD   CTT    +      SPPLT
Sbjct: 1104 PDKATCTTLTAQTIRVSWVSPPLT 1127


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 IIIIYISTFVLGNVYCASDLTEEEI 178
           II+ Y+S FV+   Y + D T   +
Sbjct: 325 IILFYLSVFVILVYYASLDETPNPV 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,339
Number of Sequences: 336
Number of extensions: 3677
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)