Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H24
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 54 2e-08
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 30 0.25
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.75
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 1.7
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 1.7
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 1.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.3
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 5.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 7.0
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 7.0
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 9.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 9.2
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 9.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.2
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 9.2
>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 189
Score = 53.6 bits (123), Expect = 2e-08
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Frame = +2
Query: 119 ISTFVLGNVYCASDLTEEEIGHVIEGRVFPPED-PNNSNWQLDTRVHV--NGGEYIGFVR 289
+ TF+L +V C + ++ + + G+V P + DTR + + + V
Sbjct: 3 LHTFLLLSVLCFAGCIQQSLQAEVYGKVLTNTILPKINLLSYDTRARLISSNKTFETVVE 62
Query: 290 EDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSK---GKYRARKVNYVQTSQVIQVPY 460
DG+F N+P Y + + DY + + IN Y + +S Y
Sbjct: 63 RDGSFTFPNVPDEIYFLRLESIDYEFSEFHIIINESIVYPYYTSPAEKRPASSTAKNTSY 122
Query: 461 PLRMKPVTKFRYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLK 631
P++++ V K Y + ++ L L +PM+++ + + L+ ILPK+ + + E +
Sbjct: 123 PIKVRAVLKRDYLKEPRKFSLIRLLKSPMMLLSLASVVLVFILPKLNIEAKALEQAR 179
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = -1
Query: 313 MHHKCPIFSDKTDVFASVNVNAGVQLPIAVVGIFRRKHTAFDNMSDFFFSQITSAINIAE 134
M++ CP+F D + + V I + I R FD+ + + S I E
Sbjct: 206 MYNACPVFKDNNFHKNATDAAHAVWRNIFIEPIVNRLAKYFDSSYKLTINDVRSLFYICE 265
Query: 133 HECRNVYYDDFC 98
+E + DFC
Sbjct: 266 YEIAIKDHSDFC 277
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.75
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 396 LELISTRTGSYM*SGCTISTTYEPDGKLCTT 304
LE S RT Y +G + T PDG LC +
Sbjct: 179 LETFSLRTSHYGHTGYVSAVTISPDGSLCAS 209
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 251 VHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMY 367
+H + E+ VREDGT VV + P +V HPD +
Sbjct: 217 IHGDFNEFNIIVREDGTAVVIDFPQ---MVSTSHPDAQF 252
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +2
Query: 239 LDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPV-RVEINSKGKYRAR 415
+DT + G EY+ D V +L +++VE + +Y+ E + + + KG
Sbjct: 235 IDTLI-AQGKEYLFVSNIDNLGAVVDLNILNHMVE-TNAEYLMELTNKTKADVKGGTLID 292
Query: 416 KVNYVQTSQVIQVP--YPLRMKPVTKFRYFQVREQW 517
V+ ++ QVP + K + KF+YF W
Sbjct: 293 YDGNVRLLEIAQVPPQHVEEFKSIKKFKYFNTNNLW 328
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 445 HSSTLPAEDETSHQIQIFSSSGTME 519
H+ST+P++DE + I +++GT++
Sbjct: 112 HNSTVPSKDEQAQDISKINTNGTLQ 136
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +2
Query: 257 VNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNYVQ 433
VN + +++ D +++ S +YV++ + P + +P+R +NS G + ++VQ
Sbjct: 1129 VNTKRPVIYMKRDDILGIYS--SIAYVIDSIAPPDVNDPLRAVVNSLGPVSEQDNDFVQ 1185
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 195 AVCFL-LKIPTTAIGNWTPAFTLTEANTSVLSEKM 296
+VCF L IP+T G P F + T VL+E++
Sbjct: 1509 SVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLTEEL 1543
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 32 DLSKKTLKLNTELILTYLKNMNTKIIIIYISTFVLGNVY 148
D + + ++ ++L YL+ ++ K+ IIY+ +L N +
Sbjct: 615 DENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKF 653
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 198 RPSITCPISSSVRSLAQ*TLPST 130
RPS+T P+ SS+ S A +PST
Sbjct: 298 RPSMTGPVPSSMGSEATLNMPST 320
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 327 VHTSSKSYTQ-TTCTNPCVSKSILKANTELE 416
+ + SYT C N SK IL+A TE++
Sbjct: 21 IMVAGSSYTSYQACINSLCSKQILEAETEID 51
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 203 FPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVV 310
FP D N+++ L+ + ++G +Y+ VRE+ +V
Sbjct: 28 FPQIDNNSASESLEYDIPLDGLDYLATVREEARKLV 63
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 418 FSSSVFAFRIDFDTHGFVHVVWVYDFDD 335
F + FR+DFD H + V +DD
Sbjct: 226 FDKQIETFRLDFDFHSIIGDVGTDYYDD 253
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 203 FPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVV 310
FP D N+++ L+ + ++G +Y+ VRE+ +V
Sbjct: 28 FPQIDNNSASESLEYDIPLDGLDYLATVREEARKLV 63
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 348 TISTTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQLLLLGSSGGNTRPSITCPISS 169
T S+ ++++ SS T P T + + + ++ GSS + T PISS
Sbjct: 602 TFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISS 661
Query: 168 SVRSLAQ*TLPSTN 127
S+ + + +PS++
Sbjct: 662 SLSTYSSSVIPSSS 675
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 9.2
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -2
Query: 603 FIILGRIMIKNNGSTIITTIGLN 535
++I G +++ NG ++T +G+N
Sbjct: 397 YLISGTTILEGNGKLLVTAVGVN 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,036
Number of Sequences: 5004
Number of extensions: 59711
Number of successful extensions: 213
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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