Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H24
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 31 1.0
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848... 29 4.1
08_02_0563 - 18728901-18729014,18729094-18729324,18729358-187293... 28 7.2
03_04_0217 - 18726511-18726624,18726704-18726947,18727067-187272... 28 7.2
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 7.2
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 27 9.5
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 27 9.5
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 9.5
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 248 RVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNY 427
+V E F+RE+ V L ++ E+VHP+++ PV V + GK R ++Y
Sbjct: 615 KVRRQAPERQAFIREE----VARLLEAGFIREVVHPEWLANPVVVP-KANGKLR-MCIDY 668
Query: 428 VQTSQVI-QVPYPL 466
++ + PYPL
Sbjct: 669 TDLNKACPKDPYPL 682
>03_05_0939 -
28983091-28983747,28983805-28983913,28984245-28984801,
28985197-28985414,28985508-28985613,28986352-28986429
Length = 574
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 192 KAVCFLLKIPTTAIGNWTPAFTLT 263
+++C L++ TTA+GN+ AF LT
Sbjct: 496 RSLCSALQLVTTALGNYLSAFILT 519
>08_02_0563 -
18728901-18729014,18729094-18729324,18729358-18729376,
18729457-18729627,18731145-18731377
Length = 255
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 14 VCHSSNDLSKKTLKLNTELILTYLKNMNTKIIIIYISTFVLGNV 145
VCH+ + K L+ E ++ + +N +II I+ F+L ++
Sbjct: 201 VCHNMRSFADKVTLLDPEEFISRISEINIEIIREEIAQFILDDI 244
>03_04_0217 -
18726511-18726624,18726704-18726947,18727067-18727237,
18727315-18727520
Length = 244
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 14 VCHSSNDLSKKTLKLNTELILTYLKNMNTKIIIIYISTFVLGNV 145
VCH+ ++K L+ E ++ + +N +II I+ F+L ++
Sbjct: 190 VCHNMRSFAEKVTLLDPEEFISSIPEINFEIIREEIAQFILDDI 233
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 394 RIDFDTHGFVHVVWVYDFDDV 332
++DFD GFV V Y FDD+
Sbjct: 748 KLDFDVSGFVTVTNSYQFDDL 768
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 152 ASDLTEEEIGHVIEGRVFPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVVHNLPSGS 331
A ++ +EE G + P++PN S++ + R GGE G + ++H+ S +
Sbjct: 407 AEEMKDEE-GSGQSTQASNPQNPNPSSYTSEVRGGGGGGEDRGEQKPSRAQLLHDAGSLA 465
Query: 332 YVVEIVH 352
VV I H
Sbjct: 466 SVVSIGH 472
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 374 VRVEINSKGKYRARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVREQWRL 523
VRVE +GK K+ + + + Q+ + + T +YF R ++RL
Sbjct: 386 VRVETTHQGKSSKYKITTITSEPLSQLNFSMDGTTQTVIQYFSQRYKYRL 435
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 290 EDGTFVVHNLPSGSYVVEIVHP 355
+DGT + H L G YV I HP
Sbjct: 2894 KDGTCIFHTLREGKYVRSIRHP 2915
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,313
Number of Sequences: 37544
Number of extensions: 364170
Number of successful extensions: 1032
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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