Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H24
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   1.5  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    25   2.0  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   3.5  
EF426146-1|ABO26389.1|   97|Anopheles gambiae unknown protein.         24   4.7  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.2  

>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 452 VPYPLRMKPVTKFRYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPE 613
           +P+  R+K +       V   +    +LF+  +V+ VL +  IM+  ++  DPE
Sbjct: 132 IPWESRIKEIESHFGSVVASYFTFLRWLFSVNIVISVLLVVFIMVPEEIYVDPE 185


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 213 KIPTTAIGNWTPAFTLTEAN--TSVLSEK 293
           +I    IG W PAF +T A   T +++E+
Sbjct: 305 RIAAPGIGCWNPAFDVTPAELITGIITER 333


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -2

Query: 342 STTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQL-LLLGSSGGNTRPSITC-PISS 169
           +T Y  D  L T    S   + +Y         +  ++  ++G+  GN+  +  C P+ S
Sbjct: 31  TTKYHVDTGLFTVATRSETVQELYEAAAKTPVATIAEMDRIMGNIAGNSTEAFICTPVLS 90

Query: 168 SVRSLAQ*TLPSTNVEMYIMMIFVFMFLRYVSINSV 61
             R+    T  ST     ++   +F+FLR  S+ ++
Sbjct: 91  RQRATRAPTT-STWTSKSVLCEELFLFLRRSSLVTI 125


>EF426146-1|ABO26389.1|   97|Anopheles gambiae unknown protein.
          Length = 97

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 335 VVEIVHPDYMYEPVRVEINSKGKYRARKVNYV 430
           ++ I  P Y  EP+RVE   +  YR + +  V
Sbjct: 23  MIRIKRPRYTPEPLRVEDALRDPYRVKVLRKV 54


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 162  RSLAQ*TLPSTNVEMYIMMIFVFMFLRYVSIN 67
            R + +  +  TN+ MY+  +F  +F  + ++N
Sbjct: 1526 RDVGKQPIRETNIYMYLYFVFFIIFGSFFTLN 1557


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,030
Number of Sequences: 2352
Number of extensions: 14896
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)