Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H24
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21324-17|AAK93840.2| 222|Caenorhabditis elegans Hypothetical p... 170 6e-43
AC024788-2|AAF60613.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.53
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 31 0.70
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 1.6
Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical p... 28 4.9
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 27 8.6
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 27 8.6
U23516-5|AAG38885.1| 449|Caenorhabditis elegans Glycosylation r... 27 8.6
AF082010-1|AAD03022.1| 449|Caenorhabditis elegans UDP-N-acetylg... 27 8.6
>U21324-17|AAK93840.2| 222|Caenorhabditis elegans Hypothetical
protein C35D10.1 protein.
Length = 222
Score = 170 bits (414), Expect = 6e-43
Identities = 80/179 (44%), Positives = 122/179 (68%), Gaps = 2/179 (1%)
Frame = +2
Query: 101 KIIIIYISTFVLGNVYCASDLTEEEIG-HVIEGRVFPPEDPNNSNWQLDTRVHVNGGEYI 277
K I++ S VLG+ TE+ +EG + P N + W R+H+N G+Y+
Sbjct: 2 KSILLLFSLIVLGSATEEVSRTEQTSTLFSVEGEIALPSTRNCAKWSAGARIHLNHGQYM 61
Query: 278 GFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNYVQTSQVIQVP 457
GFVR+D TF V +P+G+Y+V+I + D+++EP+RV+I SKGK RARK+ +Q + V +P
Sbjct: 62 GFVRQDCTFRVDFVPTGTYIVQIENTDFVFEPIRVDITSKGKMRARKLTILQPNNVNTLP 121
Query: 458 YPLRMKPVTKFRYFQVREQWRLTDFLFNPMVVMMVLPLFLIMILPKM-MNDPETKEDLK 631
YPLR+ RYF+ RE+WR+TD LF+PMV+M+V+PL +++ILPKM NDPE K++++
Sbjct: 122 YPLRLSARGPARYFRKREEWRITDMLFSPMVLMLVVPLVVMLILPKMTANDPELKKEME 180
>AC024788-2|AAF60613.1| 163|Caenorhabditis elegans Hypothetical
protein Y46E12A.2 protein.
Length = 163
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 183 MLSKAVCFLLKIPTTAIGNWT 245
+ S+ VCF +KIP A+G WT
Sbjct: 9 LFSRHVCFEMKIPVRAVGRWT 29
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = -2
Query: 345 ISTTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQLLLLGSSGGNTRPSITCPISSS 166
ISTT EP+ + T + SS Y P T S+ ++ ++G ++ SS
Sbjct: 477 ISTTIEPNAQSTTYEMESSTVSVTYEPETTSLETSSTKVSSTTATGEPASTTMEANEHSS 536
Query: 165 VRSLAQ*TLPSTN 127
T+P+TN
Sbjct: 537 TFETESSTVPATN 549
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 400 QIQS*KSQLRSNFTSHSSTLPAEDETSHQIQIFSSSGTMEAH*LLVQP 543
Q+Q + S+ +S SS+ AE +HQ+++ S+S ++E++ V P
Sbjct: 217 QVQQHRPAASSSSSSSSSSASAEHHPTHQVRVPSASSSIESNEQRVVP 264
>Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical
protein T08G3.12 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 114 YTFRHSCSAMFIALVI*--LKKKSDMLSKAVCFLLKIPTTAIGNWTPAFTLTEANTSVLS 287
Y F H+ +F + +I K+ L KA+C + IPT AI + P L +
Sbjct: 213 YFFYHTVKYLFKSKIISESTKRLQKQLFKALCIQVTIPTIAI--FIPCVYLNTSAALDHL 270
Query: 288 EKMGHLWCIIYRLVHTSSKSYTQTTCTNPCVSKSILK 398
+ + + II+ +H S + T T + K+++K
Sbjct: 271 DMIENNTAIIFLSLHGSMSTIT-TLLVHKSYRKAVIK 306
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +3
Query: 306 WCIIYRLVHTSSK---SYTQTTCTNPC 377
WCI+ V T +K + T T C NPC
Sbjct: 727 WCIVQTNVDTFTKCPKNQTMTDCLNPC 753
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 538 EQEVSEPPLFPNLKISEFGDWFHPQRVR 455
+QE +E N+KIS+ +WF QR+R
Sbjct: 169 DQEKAELAKQCNIKISQVNNWFGNQRIR 196
>U23516-5|AAG38885.1| 449|Caenorhabditis elegans Glycosylation
related protein 13 protein.
Length = 449
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 98 TKIIIIYISTFVLGNVYCASDLT 166
TKI II+I F+L +Y +D+T
Sbjct: 5 TKIFIIFIFVFILWTLYVENDIT 27
>AF082010-1|AAD03022.1| 449|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 449
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 98 TKIIIIYISTFVLGNVYCASDLT 166
TKI II+I F+L +Y +D+T
Sbjct: 5 TKIFIIFIFVFILWTLYVENDIT 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,854
Number of Sequences: 27780
Number of extensions: 334579
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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