Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H21
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   3.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 210 KCKNIRRRPKAVVPRV 257
           KC ++  RP+ VVP V
Sbjct: 247 KCLSVGMRPECVVPEV 262


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 481 HHHPHVPRH 507
           HHH H+P H
Sbjct: 51  HHHSHMPPH 59


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 481 HHHPHVPRH 507
           HHH H+P H
Sbjct: 51  HHHSHMPPH 59


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -3

Query: 383 HRLTPRLEIPPPHRIH*KSHKFHYLLRMHLIESMLSFKISISHTRHHGFRATPYI 219
           H+L     I   H     +    Y  R HL+ +    K+  S  R + F+ T +I
Sbjct: 75  HKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKETEFI 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,771
Number of Sequences: 336
Number of extensions: 2305
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)