Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H15
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 30 0.33
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 28 1.3
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.3
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 27 4.1
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 5.4
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 7.2
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 26 7.2
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 7.2
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 9.5
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 630 GSQWSMFLLNSFYFEELDLALSSRKNTTPGLDDIPYIMLQNLHVSD*YEKVFVI 469
G +W LL S Y + L L+ S+R+N + G D I Y+ + +SD +F+I
Sbjct: 321 GMRWKTELLASIYRKSLLLSSSARQNRSIG-DIINYMAVDTQKISDLPIYLFII 373
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 626 VSGACFYLTLFILKNLTWLCLQERIQPLVLTIFLILCFKICTFLT 492
+ + FY+T FIL + L +++QP + F+++ + + T T
Sbjct: 98 IIASVFYVT-FILFEMPTTLLMKKVQPKRMLAFIVISYSLTTIFT 141
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = -1
Query: 440 DVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLMQ 261
D++ +D++ +LI +L S K+ F ++L Y + K G Q
Sbjct: 370 DIKACFDSIPHDKLIALLSS-----KIKDQRFIQLIRKALNAGYLTE-NRYKYDIVGTPQ 423
Query: 260 GSSLSPILYNLYTSQIYRHVTEL 192
GS +SPIL N+Y Q+ + L
Sbjct: 424 GSIVSPILANIYLHQLDEFIENL 446
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 232 LYRIGDKEDPCINPLKANFGP*KTLLY 312
++R+G++E+P + P A F P +LLY
Sbjct: 859 IFRVGNEENPLVYPNNATFSP--SLLY 883
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -1
Query: 425 YDNVDLHQ--LIRVLY-SLG-FPGKLLKWIFNMYFGRSLYIKYNNVFHG 291
YDN ++ + L+ Y S G FP + L W FN + R + Y HG
Sbjct: 285 YDNANMMEQSLLNFAYNSAGAFPWESLDWTFNGLWARKNDLPYLKAVHG 333
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 440 DVQGAYDNVDLHQLIRVLY-SLGFPGKLLK 354
+VQG + VD+HQ R Y LG P K L+
Sbjct: 397 NVQGPFTGVDMHQWYRAGYFPLGLPIKRLE 426
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 350 SILKVFLGNPKNIAP*LIGEDLHYHMP 430
+IL V + K +AP +IG L +H+P
Sbjct: 216 NILPVLVKRRKELAPKIIGSLLEFHLP 242
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 708 IESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLL 604
I ++ + LA+ +NN N +F+ N S+FLL
Sbjct: 671 INAYAKLLAKDANNKTNFQAIFDNNPKFLDSLFLL 705
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 732 NLSKNDEWIESFLEKLAQPSNNNDNISGLFEFN 634
N+ + E I FLEK+ +NN N FN
Sbjct: 340 NVLRTRELIPEFLEKIRSSYSNNQNFDSQNAFN 372
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 663 DNISGLFEFNDGSQWSMFLLNSFYFEELDLA 571
+NI +FE+ D S L+ ++F EL++A
Sbjct: 456 NNIWSVFEYKDPSTKLSALIPKYFFSELNIA 486
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = -3
Query: 414 RSSPIN*GAIFFGFPRKTFKMDFQYVFWSFFIH*IQ*CFSWSKISFQGVDARVFFIS 244
RS + G FP D W FIH + S+S ++ G+D + +S
Sbjct: 92 RSDEVVNGFPLIYFPEDLASHDISGKDWKSFIHDVNMACSFSDVALMGLDQILNLVS 148
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 484 KSVCYQVLLQFVFSLMCRGHMIM 416
K+V Q L + F L+CR HM++
Sbjct: 413 KNVIRQFLAKHDFDLICRAHMVV 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,114
Number of Sequences: 5004
Number of extensions: 75049
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -