Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H15
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 44 1e-04
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 41 0.001
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 40 0.002
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 33 0.26
01_01_0418 - 3142659-3145622 29 3.3
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964... 29 4.3
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 29 4.3
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/110 (24%), Positives = 54/110 (49%)
Frame = -1
Query: 482 KCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNN 303
+C S + + LD + A+D ++ ++ V+ +GFP K ++W+ ++ S + N
Sbjct: 443 QCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNG 502
Query: 302 VFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLE 153
V +G+ QG LS +L+ L + R + + + + G L P+ E
Sbjct: 503 VPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRIINKAFHQ-GLLSKPINE 551
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = -1
Query: 488 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 309
++ C + + LD A+D+V+ L ++L GFP + WI N+ +
Sbjct: 26 IQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLL 85
Query: 308 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 207
+ + KGL QG LSP L+ L + R
Sbjct: 86 HGIPGKWITCKKGLRQGDPLSPYLFILVADVLQR 119
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/94 (28%), Positives = 39/94 (41%)
Frame = -1
Query: 488 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 309
++ C I V LD A+D+V L ++L GFP + WI + +
Sbjct: 1041 IQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLL 1100
Query: 308 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 207
N V KGL+QG LS L+ L + R
Sbjct: 1101 NGVPGRWICCKKGLLQGDPLSSYLFILVADVLQR 1134
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -1
Query: 443 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 264
+D+ AYD ++ L L LGF + + I+ N + +G+
Sbjct: 257 IDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIR 316
Query: 263 QGSSLSPILYNLYT 222
QG +SP L+ L T
Sbjct: 317 QGDPISPYLFLLCT 330
>01_01_0418 - 3142659-3145622
Length = 987
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -1
Query: 497 LTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLY 318
L D C LSG + GA N L +L LY F G++ + +FN+ R +Y
Sbjct: 377 LLDFSNCGLSGKIPSAI-----GAIKN--LKRL--ALYKCNFSGQIPQDLFNLTQLRVIY 427
Query: 317 IKYNN 303
++YNN
Sbjct: 428 LQYNN 432
>04_04_1451 +
33695734-33695806,33695946-33696179,33696341-33696434,
33696532-33696749,33696859-33696992,33697098-33697325,
33697417-33697845
Length = 469
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -1
Query: 647 YLNLMTEVSGACFYLTLFILKNLTWLCLQERIQP-----LVLTIFLILCFKICTF 498
Y N + V GA + L I + C+Q RI P L F ++CF + TF
Sbjct: 400 YFNEVLGVLGALVFWPLAIYLPVEMYCVQRRISPWTPRWAALQAFSVVCFVVGTF 454
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 29.1 bits (62), Expect = 4.3
Identities = 27/97 (27%), Positives = 37/97 (38%)
Frame = -1
Query: 485 KKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYN 306
+KC + LD+ AYD VD L VL +GF KW +
Sbjct: 224 QKCKRENQNFCALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRKWTMSCV---------- 273
Query: 305 NVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTE 195
+GL QG LSP L+ L+ + H+ E
Sbjct: 274 -----DICPIRGLRQGDPLSPYLF-LFIADGLSHILE 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,674,536
Number of Sequences: 37544
Number of extensions: 400675
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -