Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H14
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 29 0.48
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.84
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 2.6
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 2.6
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 4.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 26 4.5
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 26 5.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.9
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 7.8
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 25 7.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 7.8
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 218 SFFGGMLPSCFSESARQRHPLVLSCLLCF----GGGVLLATSLVHMLPEAREK 364
S G LP S+ + R + + L F G GV+LAT+ +H+L A K
Sbjct: 74 SLIGMNLPLVLSKITKNRPNVYIEYLYLFARYFGSGVILATAFIHLLAPACNK 126
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Frame = -1
Query: 237 NIPPKKLPKPSASIDTTLAVVTFM--IF-----NIYFDNRTRVLYRTLDFVTVKLPP 88
N+ P +L S S T+A+++F+ +F N+Y + V+ R+LD +T+ +PP
Sbjct: 382 NLRPSQLYLDSMSFLKTMAILSFVSIVFIAIYLNLYNASFGHVVLRSLDVLTILVPP 438
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 524 GELRERCPGEVDNPQMCHVSHTAP 595
G LRERC G+ DN ++ V+ AP
Sbjct: 283 GRLRERCVGDTDNAEL-KVTGVAP 305
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 1 RPADE*RSVKAKERSCSVEKKKYISNYPS 87
R ADE SVK KE+ E KK+ + PS
Sbjct: 60 RSADEEASVKRKEKKSKHEHKKHKKDKPS 88
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 572 TFEGYPPHRDIVLSILHRDSAKTISQFHISSPDWPDFHD 456
+F+G+P + D++ SI +R +S +IS HD
Sbjct: 415 SFDGFPRYMDLLQSIWYRLGCSILSMTYISIYQKNHVHD 453
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 542 CPGEVDNPQMCHVSHTAPCNRSSS 613
C G +D PQ C V +T+P S S
Sbjct: 63 CSGSMDAPQPCAVLYTSPSPSSIS 86
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 638 ERITILLFLMNSYCTEPYDSRGTFEGYPPHRDIVLSI 528
+R+ L++ N+YC++ Y R + Y P L I
Sbjct: 7 KRLRAPLYIQNAYCSKNYFYRSFIQYYSPSNGPYLKI 43
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 623 LLFLMNSYCTEPYDSRGTFEGYPPHRDIVLSILHRDSAKTISQFH 489
+L ++ +Y EPYD F Y +R L L RDS+ ++ H
Sbjct: 1062 VLLIIGNYFNEPYDRASAFSLYMIYR---LETL-RDSSSALTLMH 1102
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 240 LHVFRKAQDNGTL--SCYPASSASVVECFWPLPSSTCCQKQGKNTRTTQS*WSALVSSLF 413
LHV QD+G + SC A++ ++++ P+ CC G ++L S
Sbjct: 124 LHVL---QDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESAL 180
Query: 414 TWL 422
+WL
Sbjct: 181 SWL 183
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 293 LLCFGGGVLLATSLVHMLPEAREKYPNYSELMVCIGFFIVYLVDEIFHLCSTE 451
+LC ++ L+ P A + + Y + + FFI Y + + H+ S +
Sbjct: 491 ILCLMAEFYVSLFLIGGSPNANDFFQGYLAACIALAFFIGYKIYDRSHIPSLD 543
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 317 LLATSLVHMLPEAREKYPNYSE-----LMVCIGFFIVYLVDEIF 433
L + L++ L EAR+ + NY + ++ C+ F VY D F
Sbjct: 780 LASFELLNNLTEARKNFSNYRDCLENCVLPCVPFLGVYFTDLTF 823
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,282
Number of Sequences: 5004
Number of extensions: 70903
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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