Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H12
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   2.6  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   3.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   6.0  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 33  SLKELTQPKMYKFTILFLXFGLLHNGRSPTHFHIQLGWKKGCHRRHCVLQER*ILGVY 206
           + KEL     Y + +LF+ F LL NG    +  + + WKK    +   L ER  +GVY
Sbjct: 189 NFKELVISLTYFWGLLFVIF-LLGNGF--VYVPVSM-WKKAFITKRAALLERQAVGVY 242


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +2

Query: 80  IPXFWLAS*WPKPNSLSHPAGVEKGLPSPALCPAGTM---NPWRLFINLFRMKLKNSCYA 250
           IP +W A    K ++   P+ +EK   S       ++      +LF+N    + KNS   
Sbjct: 18  IPYYWNAE--LKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDL 75

Query: 251 RSLKPTPPKRKHR 289
           R   P  PK K R
Sbjct: 76  RKQLPDRPKFKKR 88


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +2

Query: 116 PNSLSHPAGVEKGL----PSPALCPAGTMNPWRLFINLFRMKLKNSCYAR 253
           P+S   P G  +G     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   RPMISSCFEVTQRTNSAKNV 64
           RP +SSCF VT + +S + +
Sbjct: 212 RPQLSSCFLVTMKDDSIEGI 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,568
Number of Sequences: 5004
Number of extensions: 32985
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)