Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H11
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    53   3e-08
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.55 
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   5.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.1  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   9.0  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +3

Query: 153 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 287
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSR 55



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 265 AITLSSPGDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 438
           ++ +S  G  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 50  SVVVSREGS-SKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 137 LDAFAADFATLHSFFASLLVQLGFLS 60
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -1

Query: 396 SKPVTQIVLLEVTFC*ILQVPL*KRNVCGDSDFRLIPWRRQRDCLGYLFCPQL 238
           SKP     L +   C +   P       G SD  ++PW   R CLG    P L
Sbjct: 115 SKPAATYFLKQKVTCTVTD-PTIDWVFFGMSDGSVVPWDVTRHCLGKFKVPNL 166


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 153 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 263
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 220 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 92
           ++ +    ++    G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 198  DVGNFEKYLKEHVKVEGKTNNLSNH 272
            + GN +KY + ++KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 350 KYFRYLFEKGMSAVIATFVLS 288
           K+FRY+F   ++ ++  FVL+
Sbjct: 198 KWFRYIFRVSVAVILLDFVLN 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,276
Number of Sequences: 5004
Number of extensions: 31925
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)