Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_H09
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 70 4e-13
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 29 0.95
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 2.9
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 3.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 3.8
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.8
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 26 5.1
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 5.1
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 8.9
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 8.9
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 69.7 bits (163), Expect = 4e-13
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Frame = +1
Query: 343 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY-------- 498
L K++ PG +LG++ ++ + + VS+P L G V +IS+ + L++
Sbjct: 101 LRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNA 160
Query: 499 ---VEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTM--------LTTMPQHVN-SGKRH 642
ED ++ +L ++K GQ++ VSV L NT L+ PQ N S
Sbjct: 161 ATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEA 220
Query: 643 TDIXKGAIFXAXVSSXEXHGYVMDLGIPNTTAFLPXK 753
D G++ A VSS E HG V D+GI N T FL K
Sbjct: 221 ADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKK 257
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 352 KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLE 492
++L PG L+G+V +V++ + +P + G V + + Y+ L E
Sbjct: 1048 ENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPE 1094
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 0.95
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 289 DEAQDYLKTHKLNNNLIFLSSKSLRP-GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI 465
DEA+ ++ T L N++ + L P G++ LG V+H + I + LG V HI
Sbjct: 227 DEAKQFVVTRLLQRNVV-IELLDLAPNGVSFLGNVLHPAG-NIATFLLSSGLGRVADNHI 284
Query: 466 S 468
S
Sbjct: 285 S 285
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 460 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQ 618
H+ K L+AY E+ E+ R+ +F P +EL LT P+
Sbjct: 477 HLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRTLTLTVTPE 529
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 635 FPLFTC*GIVVSMVLPGASSTTLTAMY 555
FP+F C I+V +LP S T +++
Sbjct: 579 FPVFLCYDILVETILPAGSQTLTDSVF 605
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 286 SDEAQDYLKTHKLNNNLIFLSSKSLRPGIN 375
+DEA L + NN IFL +LRP ++
Sbjct: 911 ADEASRQLVWQAIENNEIFLDPHTLRPNVD 940
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 391 IHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQ 555
+H + M +L G +M + Y++ +ED TE + L F+PGQ
Sbjct: 41 VHAIVTEETAPMALRLSGQLML-GVVRIYSRKARYLLEDCTEALMRLKMSFQPGQ 94
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 307 LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 474
L+ HK +FL S + P I LL + VS + +S+ +L N++A H++ S
Sbjct: 142 LQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMS 197
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 552 TRFEHL*QFTNFFSLIFNISFK*LIIRLADVTCHDIAQ*FARH 424
+RF++ F F S +F + + L IRL VT D+A+ H
Sbjct: 99 SRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREH 141
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 445 NVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHV 624
N+ A + ++ +L+E V+ + + + PGQ + + L P + +
Sbjct: 641 NIAAGSLKDTSVRLVEGVVKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLKSSAI 700
Query: 625 NSGKRHTDI 651
SG H+DI
Sbjct: 701 RSGSIHSDI 709
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 472 SYNKLLEAYVEDKTEKVRELSQMFKPGQYI 561
S K E E EK+ + Q+FKPGQ +
Sbjct: 50 SLRKSAETANEKFIEKINKEHQLFKPGQIV 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,116
Number of Sequences: 5004
Number of extensions: 49411
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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