Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H09
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.77 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 208 SCHSA*NVHR*AFFHLAESILPRLPSFFTLNSRVXL*NTLFS 83
           SCH+  +    +F       LP LPS  T NS+  L + LF+
Sbjct: 659 SCHTTPD----SFIEAPNKTLPSLPSTLTKNSKQGLFSKLFA 696


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 337 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 453
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 660 TFXNIGMSFPTVYVLRHSRQHGVARSQFHYTHSYV 556
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 337 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 453
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 660 TFXNIGMSFPTVYVLRHSRQHGVARSQFHYTHSYV 556
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 337 IFLSSKSLRPGINLLGRVIHVSD 405
           IFLS+KSLR   NL    + +SD
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISD 64


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 77  K*AEQGVLKXHTGIKRKKRWQTRKNT 154
           K A +   K  TG++R + W +  NT
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNT 368


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  LISKN*IKRKHQLNKLNRV 95
           L   N + R H++N++NRV
Sbjct: 363 LPQSNKMNRMHRMNRVNRV 381


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 148 EYFPRGGKKPT 180
           E FPRGG  PT
Sbjct: 148 ESFPRGGSLPT 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,582
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)