Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H08
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    47   3e-06
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.33 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   7.2  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 8/204 (3%)
 Frame = +1

Query: 211 SDSTNSDSETEQHLYKRVKLPVPDLSRVRIVLTEETHIDDHQKHKGRKRSFPHVRGNWAT 390
           S S   D ET     + +K+P    S   +   +    D  + H+GR R   H+ G W  
Sbjct: 9   SSSGEDDDETISDNPRMLKVPKLQESFHELYKKKPKTFDSPEFHEGRIRGQKHIEGLWFV 68

Query: 391 FVYVQYPNDDFVNKLSRKVLDALTESSH---TWHKC-ENLHITLSKTVVLNYHWIAPFHN 558
             Y++      V K  R+ L++ +       + H     LH+++S+   +NY       +
Sbjct: 69  QTYLEVDLSKKVKKGIREFLNSQSRFQSLLCSEHNVPRRLHLSISENYRINYSTKNQLVH 128

Query: 559 SLKKTLT--NFKCFELEFDELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVDEILSEF 732
             ++     N++  +    ++ +L N++K+R F+  +  +FS +++  +     + + EF
Sbjct: 129 KWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAFEC-KFSDENYKDLISHASDCMKEF 187

Query: 733 KLPKFYDEPSFHMSIL--XTNGDK 798
                 ++   H+S     TN D+
Sbjct: 188 TNRNLREDFLLHISFASSLTNEDE 211


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 148 DLHGCLSIKLMSCLSYINDYGSDSTNSDSETEQHLYKRVKLPVPDLSRVRIVLTEETHID 327
           DLH   +  ++SC     ++ SD  N   E E   YKR  +P  D  +      +E ++ 
Sbjct: 173 DLHSTSASSVISCTPPAINFTSDICNEQIELE---YKRKPIPDYDFMKGLETTLQELYV- 228

Query: 328 DHQKHKGRKRSF 363
           +HQ  K R   F
Sbjct: 229 EHQSKKRRLELF 240


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 166 TNSREDQIVFKHKRRKATEI 107
           T SR D+I++ +KR K TE+
Sbjct: 575 TASRIDKIIYSYKRNKNTEV 594


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 517 TVVLNYHWIAPFHNSLKKTLTNFKCFELEFDELQ 618
           T +++ HW+A FH S  + L       ++ D+L+
Sbjct: 890 TQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLR 923


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 133 HKRRKATEIIILNIKCNKLGTKLKVCDKNIKNME 32
           H+R+   +II +  KCN+L +++ +  K +  +E
Sbjct: 44  HQRKLEIKIINIESKCNELSSEISLLRKRLGIIE 77


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 541  IAPFHNSLKKTLTNFKCFELEFDELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVDEI 720
            I      L KTL +     +  DE+ VL    K +     +T R ++    +I +KVDE+
Sbjct: 3656 IRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKH----ETIRLAYSESQSINRKVDEL 3711

Query: 721  LSEFKL 738
            +  +KL
Sbjct: 3712 IRRYKL 3717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,576
Number of Sequences: 5004
Number of extensions: 58174
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)