Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H07
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    30   0.30 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   2.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   6.4  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 365 VGDTDRSSSEAATNSSQPT*PPL--HRKPQHSPTQNGPV 475
           V D   S  ++A + + P+ PP+  H KP+ S TQ+ PV
Sbjct: 319 VSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPV 357


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 114 YIDPGDDDLEVNLPDYGEDPADLQLL--QDVGKRSSLIYVF 230
           YIDPG DD  +  P+  E P DL LL   D+     L+Y +
Sbjct: 26  YIDPGSDD-SLKHPEVPEQP-DLILLSHSDLAHIGGLVYAY 64


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 588 FLEHL*IYKNFENEIRFNCCFRFVNSLALVDRVSAYVVGQSPXLIAQS 731
           F++HL   ++ EN I+   CF F  +LAL   V   V  ++    AQS
Sbjct: 677 FVDHL---QSNENYIQTEACFEFFKALALCHSVVTDVQDETLIYNAQS 721


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 432 STGSHNIRQHKTDPLRSYFPV 494
           S  +H IRQH  D L S+ PV
Sbjct: 750 SVSAHKIRQHVQDSLTSHEPV 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,288
Number of Sequences: 5004
Number of extensions: 46035
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)