Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H02
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    32   2.1  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    32   2.1  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    32   2.1  
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein...    32   2.1  
U79668-1|AAB49678.1|  916|Homo sapiens alpha1A-voltage-dependent...    32   2.8  
BC034917-1|AAH34917.1|  727|Homo sapiens RHOBTB2 protein protein.      32   2.8  
AY009093-1|AAG61157.1|  727|Homo sapiens DBC2 protein.                 32   2.8  
AF315385-1|AAK07562.1|  727|Homo sapiens p83 protein.                  32   2.8  
AB018260-1|BAA34437.2|  751|Homo sapiens KIAA0717 protein protein.     32   2.8  
BC064844-1|AAH64844.1|  664|Homo sapiens DCST1 protein protein.        30   8.5  
AL451085-34|CAI13272.1|  706|Homo sapiens DC-STAMP domain contai...    30   8.5  
AL451085-33|CAI13271.1|  664|Homo sapiens DC-STAMP domain contai...    30   8.5  
AK057347-1|BAB71440.1|  706|Homo sapiens protein ( Homo sapiens ...    30   8.5  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 552  PG*RSHPRGTGEKPQLER*WEHCKS 478
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 552  PG*RSHPRGTGEKPQLER*WEHCKS 478
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 552  PG*RSHPRGTGEKPQLER*WEHCKS 478
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
            lipoprotein-related protein 1 variant protein.
          Length = 2359

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 552  PG*RSHPRGTGEKPQLER*WEHCKS 478
            P  R  PR TG+K +L++ WEHC++
Sbjct: 2033 PKCRCQPRYTGDKCELDQCWEHCRN 2057


>U79668-1|AAB49678.1|  916|Homo sapiens alpha1A-voltage-dependent
           calcium channel protein.
          Length = 916

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 134 RHRQKGAASHRGESEQHHHRFHNERGLCF 48
           R +++G    R   + HHH  H+ R LCF
Sbjct: 872 RDQERGRPKDRKHRQHHHHHHHHHRFLCF 900


>BC034917-1|AAH34917.1|  727|Homo sapiens RHOBTB2 protein protein.
          Length = 727

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 107 HRGESEQHHHRFHNERGLCFL 45
           H+G S+QHHH  H+  G  FL
Sbjct: 319 HQGHSDQHHHHHHHHHGRDFL 339


>AY009093-1|AAG61157.1|  727|Homo sapiens DBC2 protein.
          Length = 727

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 107 HRGESEQHHHRFHNERGLCFL 45
           H+G S+QHHH  H+  G  FL
Sbjct: 319 HQGHSDQHHHHHHHHHGRDFL 339


>AF315385-1|AAK07562.1|  727|Homo sapiens p83 protein.
          Length = 727

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 107 HRGESEQHHHRFHNERGLCFL 45
           H+G S+QHHH  H+  G  FL
Sbjct: 319 HQGHSDQHHHHHHHHHGRDFL 339


>AB018260-1|BAA34437.2|  751|Homo sapiens KIAA0717 protein protein.
          Length = 751

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 107 HRGESEQHHHRFHNERGLCFL 45
           H+G S+QHHH  H+  G  FL
Sbjct: 343 HQGHSDQHHHHHHHHHGRDFL 363


>BC064844-1|AAH64844.1|  664|Homo sapiens DCST1 protein protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 428 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 348
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AL451085-34|CAI13272.1|  706|Homo sapiens DC-STAMP domain
           containing 1 protein.
          Length = 706

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 428 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 348
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AL451085-33|CAI13271.1|  664|Homo sapiens DC-STAMP domain
           containing 1 protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 428 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 348
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AK057347-1|BAB71440.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32785 fis, clone TESTI2002251. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 428 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 348
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,329,156
Number of Sequences: 237096
Number of extensions: 1981388
Number of successful extensions: 6440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6438
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)