Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_H02
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.82 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 236 YFSLKVESASVDDFRGV-----QRPAVGVQDYSGMMRGLRHRQKGAASHRGESEQHHHRF 72
           Y S K+++A+VD    V       P V  Q +  M     H Q     H+ +++Q H + 
Sbjct: 138 YASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQA 197

Query: 71  HNE 63
           H +
Sbjct: 198 HEQ 200


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 165 DPHGRPLDTAEVINARALHLQAKVLE 242
           DP+ RP+ + ++ N   + L  K++E
Sbjct: 56  DPNVRPISSHQIANNVTMQLLPKLME 81


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -2

Query: 125 QKGAASHRGESEQHHH 78
           +  +  H G+S  HHH
Sbjct: 391 ENNSRGHSGQSSSHHH 406


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 98  ESEQHHHRFHNERGLCFLTMYVDHFKPH 15
           E+ Q HH   N       T   DH +P+
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHHRPY 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,942
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)