Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G24
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    58   1e-10
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
 Frame = +2

Query: 29  VEKVYGICGHVDILVNNGGVTHRGSILNTKTDVDQKIMFINYFGSVALTKAVLPKMIERK 208
           +E V    G +DIL+NN  +    ++ N +    +KI  IN  G   + + VL K++++K
Sbjct: 75  IEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL-KLMKKK 133

Query: 209 ---SGHVVFNSSVQGLISIP---NRSAYAASKHALQAFGDCLRAEMDQYGINVTVVS 361
              +G +V  +   GL  +P   NR AY ASK AL    DCLR+E+ Q   N+ V+S
Sbjct: 134 GINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVIS 190


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 237 TELLNTTCPDFLSIIFGSTAFVNATDPK*LIN-IIF*STSVLVFKIDPL*VTPPLLTKMS 61
           TEL   + PD + ++F +  ++N   P    + +      +    I+ + +T  LLTK++
Sbjct: 608 TELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVA 667


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 216 CPDFLSIIFGSTAFVNATD 160
           CP+  SI+F S+ F+N  +
Sbjct: 383 CPESDSILFVSSPFLNGLE 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,047
Number of Sequences: 438
Number of extensions: 4004
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)