Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G23
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    29   0.056
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.056
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 326 FFKTHVMARR--LCNAVQR-NCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFT 496
           FFK  +   R  +C A    +C+      + CR  + +  + + +    V  + GP+  T
Sbjct: 61  FFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNST 120

Query: 497 LKTPKGTRDYNPQQ--MTIRNNVLD 565
           L+  + +  YN  +  M+   NVL+
Sbjct: 121 LRRQQMSSYYNESRVMMSPPGNVLN 145


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 326 FFKTHVMARR--LCNAVQR-NCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFT 496
           FFK  +   R  +C A    +C+      + CR  + +  + + +    V  + GP+  T
Sbjct: 61  FFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNST 120

Query: 497 LKTPKGTRDYNPQQ--MTIRNNVLD 565
           L+  + +  YN  +  M+   NVL+
Sbjct: 121 LRRQQMSSYYNESRVMMSPPGNVLN 145


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/75 (21%), Positives = 31/75 (41%)
 Frame = -1

Query: 694 TLVFQIIY*F*ILTILPSKHIL*LKNRCINTLSSVSPKNCNNFIQYIITYCHLLWVVVSC 515
           T+ F + Y   ++ ++   H L   N+  + L   S K    FI   + +  LLW+    
Sbjct: 93  TVFFCLFYQNKLIEVISKLHKL--DNKLKHMLIWKSYKRTQIFITCELFFVILLWISFFL 150

Query: 514 SLWCFKSKLLWACIF 470
           +     +   W C++
Sbjct: 151 NFMLHCNNTTWRCLY 165


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 613 CINTLSSVSPKNCNNFIQYIITYCHLLW 530
           C+ T  SV    C + ++Y   Y H  +
Sbjct: 136 CVQTEKSVFDFLCRHTVEYFQNYIHFFY 163


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 610 INTLSSVSPKNCNNFIQYIITYCHLLWVVVSCSLWCFKSKL 488
           + T   V    C NF    IT   +  + V+  L+C+ S L
Sbjct: 515 LQTGGKVETSICKNFCFGFITKQLIFMIFVTYQLYCWSSFL 555


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,345
Number of Sequences: 336
Number of extensions: 4303
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)