Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G22
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.4  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    26   4.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   5.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   5.5  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   9.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.6  

>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 426 LSFFDSFISHGLGPRLFSQLSISNFCISSYAVSKETVFSL 307
           +S+F + ++H   P +F+QLS  + C  +    K+  ++L
Sbjct: 441 ISYFSNKLTHQTLPNVFTQLSELSKCHEASLAEKQLTYNL 480


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 150 INVFRMLSTRAVNPVVIIFSLF 85
           +N FR+L  R   PVVII S F
Sbjct: 39  VNAFRLLMRRFAQPVVIITSGF 60


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 241  LCPFPQTKRSSYNK*YKRNTISKSSSLAYG-N*CISYVVYASCKSC 107
            +CP   TK+  Y + YK N +    SL  G N CI+ V +   K+C
Sbjct: 1265 ICP-EFTKQKKYYEQYKEN-LGFFDSLCIGDNECITRVYFLLLKAC 1308



 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +2

Query: 119 ARVDNIRNTLIAISKRRTFRYGVPFILFVVGGSFGLREWTQIRYQFSQVKGVSKEEAEKM 298
           A++  +   LI +  +   RY +  I F +  +F   +  +   ++     ++ EEA K+
Sbjct: 783 AKIQIMHACLIDVCLKNRDRYNIFDIAFHINAAFDFVKGDKRSVEYCHYLHLAAEEALKI 842

Query: 299 GLHRE 313
           G ++E
Sbjct: 843 GANQE 847


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 173 KFFACLWQLMYFVCCLR 123
           +   CLW L +  CCLR
Sbjct: 84  RIIPCLWILYFLSCCLR 100


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 270 PFTCEN*YLICVHSLKPNDPPTTNNINGTPYLKV-LRLLMAINVFRMLSTRAVNPVVIIF 94
           P  CE    I V    PNDP TTN I+  P   + L  +  I      +  A NP  IIF
Sbjct: 401 PKICEKTKFIFVPG--PNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIF 458


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 368 YQYPIFVFLHMQYPKKQF 315
           Y +P+ VF+ +QYP+  F
Sbjct: 12  YFFPLLVFITLQYPRWTF 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,372
Number of Sequences: 5004
Number of extensions: 44664
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)