Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G21
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.60 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.8  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    28   1.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.8  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   7.4  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   7.4  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   7.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 32/124 (25%), Positives = 55/124 (44%)
 Frame = -2

Query: 443  SSFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPSDKSEVGARSFLVPRVMT 264
            SS  +  + G+ + S    +   + T     A I   +    +  S  G+ +  V  V +
Sbjct: 1041 SSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSS 1100

Query: 263  TASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAASTAFKPITPV 84
            T+SV  TAS T + + +   T+S+ +   S +   S T + +S    SAA+TA   +T  
Sbjct: 1101 TSSVEGTASSTIAAAAS-AATLSSDAASGSSTVTSSATASSSS----SAATTADSSVTTD 1155

Query: 83   EPKN 72
             P N
Sbjct: 1156 TPSN 1159


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 269 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 168
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 155 RTNARTSRPFLSAASTAFKPITPVEPKNHDL 63
           R  A  S  F    S  ++P++ VEP NHDL
Sbjct: 296 RNRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 435 ERRPQENVPGSERQRLKLDSRVSATLHRRPKPRNDY*SEP*EDTGQDHCQVRP 593
           +R  QE +   ERQ+LKL++  +  + +R  P  ++ ++  ++  +   + RP
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRP 210


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 708 PICRKVKRIFLHFFPCNFFY 767
           P C+KV R+FL FFP N+ +
Sbjct: 227 PDCQKV-RVFLAFFPTNWCF 245


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 362 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 267
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 246 DGLMYRVWFENISFDYLDLVFKMFW 172
           D L    WF ++S DY+D + +  W
Sbjct: 21  DSLKKPNWFTDVSIDYVDELIEHLW 45


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 266 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAA--STAFKPI 93
           +T+SVP+    + S + + P+++++ S   SGS   S T   T     ++    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 92  TPVEP 78
           T   P
Sbjct: 319 TTSAP 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,162
Number of Sequences: 5004
Number of extensions: 69752
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)