Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G21
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 170 SFAGSRTNARTSRPFLSAASTAFKPITPVEPKNHD 66
           +FA  +T+  +    L+   T F  +TP  P+N D
Sbjct: 338 AFARKKTDYSSFGKILATEPTLFSNVTPKFPRNID 372


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 596 PRSHLAMVLPGVFSGFTSIIIS 531
           PRS  A VL  V++GF  II++
Sbjct: 631 PRSFSARVLGMVWAGFAMIIVA 652


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 133 LEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVH 237
           L    +   P +LP+HL   +   K  V+E   +H
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLH 401


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 198 LDLVFKMFWEFCWVTYERSYF 136
           +++V KM W +  + YE S +
Sbjct: 272 VEIVMKMKWSYVSIIYEESNY 292


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -1

Query: 231 RVWF-----ENISFDYLDLVFKMFWEF 166
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -1

Query: 231 RVWF-----ENISFDYLDLVFKMFWEF 166
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = -1

Query: 231 RVWF-----ENISFDYLDLVFKMFWEF 166
           R WF      +I  DY+ L+F  F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,074
Number of Sequences: 438
Number of extensions: 4993
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)