Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G20
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.58 
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   4.1  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   5.5  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   7.2  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   7.2  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   7.2  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = -1

Query: 502 FAAVGLRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRW---L*RG 332
           FA+ GL+    ++ T KI  YT+  +    AIA       S ++  +  ++ W   L  G
Sbjct: 323 FASSGLKTNISTLNTGKIWGYTIGTI--CVAIASKM---GSSMLAARILKMPWSDSLVVG 377

Query: 331 SFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAF 212
           S  +   +  L  + I +  GI+ ETI + F+F   I  F
Sbjct: 378 SLMSCKGLVELIVLNIGLSTGILNETIFSMFVFMAVITTF 417


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 641 LCIDGHPRVLYCGGESAFDDLTSTCVSADE---VXACPAE 751
           LC+D H R+++   ++   DL +  V A+    V A P E
Sbjct: 224 LCVDQHGRIVFDSSDTVIKDLENKDVEAESQEAVVAAPIE 263


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 615 LTTIARSISCASMGILASSIAVVSPHSTI*PQHVSPPMKXEHVLLS*GPXQSVPRTTQS 791
           L+T   SI+C+ +       A V   S +    VSPPM  E V  S    +S+P    S
Sbjct: 281 LSTACGSIACSMLTKTTPHRASVDILSNLHESTVSPPMADESVQRSSEVSKSIPNVELS 339


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -1

Query: 277 HVGIVTETIGA*FLFSGSIDAFNISVAASGHWIPFVQFPALSSRPDWCLFLVLILEAICL 98
           H+G +  + G  F   G+I  FNI + A    I  + F      P W   LVL    I L
Sbjct: 109 HIGAIARSPGF-FNVIGTITFFNIFITAIAFVICVITFVPHIQWPSW---LVLANVGIQL 164

Query: 97  SKRLILCLCVNKGAKARQDH 38
              L+L +   +  + +  H
Sbjct: 165 IVLLLLLVARRQATRLQAKH 184


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 25  GEDFCDLDVLLRLCLHTNTVSAFWTDKSLPKSV---PGTSTSQAYWTMQGTERKVSSVRK 195
           GED C+L   +R+C    T+     +     S+   P  + S+   + +GT R  +   K
Sbjct: 159 GEDLCELQDAIRICFSCFTLPQQTMESPFATSMSKAPAKTESRGSNSFEGTSRLANLGAK 218

Query: 196 L 198
           L
Sbjct: 219 L 219


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = -1

Query: 337 RGSFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAFNISVAASGHWIPFVQFPA 158
           R + +  +   +  R + +  +   T+T  A F+F    D  N+ V   G    F  FP 
Sbjct: 307 RRNLQRTYGEEISQRPFYKTRICYYTDTADAEFVFDYHPDYENLFVCTGGSGHGFKFFPI 366

Query: 157 LSSRPDWCLF 128
           L      C+F
Sbjct: 367 LGKYSIGCMF 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,136
Number of Sequences: 5004
Number of extensions: 73734
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)