Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G20
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 31 0.81
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 3.3
11_06_0186 + 21027581-21028825 29 4.3
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 29 4.3
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 28 7.6
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122 28 7.6
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 28 7.6
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 10.0
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 28 10.0
01_03_0127 + 12787664-12787907,12790660-12790715,12792203-127924... 28 10.0
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 487 LRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRWL*RGSFETR 317
L+ + Q+ G + AY HA+S+ I G+ F M FCR + GS + R
Sbjct: 545 LQYQQQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSLKFR 601
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 607 VSISGWGTKFSTYWYFGATESEESFSIAVGDFI 509
VS GWGTK+ ++W T ESFS +GD I
Sbjct: 498 VSYHGWGTKYDSFWCCYGT-GIESFS-KLGDSI 528
>11_06_0186 + 21027581-21028825
Length = 414
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 655 PIDAQEILLAIV-----VRPVVSISGWGTKFSTYWYFGATESEESFSIAVGDFIRPF 500
PI ++I LA V V+P+ SG K+ WY G +S SI D +R F
Sbjct: 110 PITGKQIALAPVTTIEQVKPIFDDSGAVHKYKYSWYTGQMTVSDSPSILAPDELRNF 166
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 240 NYAPMVSVTIPT*ISMYIRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN*ATPAIAAD 419
N + T+PT IS TL RVSN+ +S + C+ N TP++++D
Sbjct: 635 NMSSTYIATLPTEISKLQCLRTLRCTRVSNNNNFSINHPVKCLTNTMCLPNIFTPSVSSD 694
Query: 420 S 422
+
Sbjct: 695 N 695
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 428 GVNGVGYDFVCPDGLAFNSETYRCE 502
GV + Y+F+C L F+S+T++C+
Sbjct: 116 GVCVISYNFLCMRILLFDSDTFKCQ 140
>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
Length = 530
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 149 TGQCRELNERYPVSGSCDRYIECINGTAEEKLC 247
T CRE RY + GSC I+ + E KLC
Sbjct: 28 TNCCRERVWRYAMHGSCSIDIQRLAADLETKLC 60
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 607 VSISGWGTKFSTYWYFGATESEESFSIAVGDFI 509
VS GWGT+++++W T ESFS +GD I
Sbjct: 325 VSYHGWGTQYNSFWCCYGT-GIESFS-KLGDSI 355
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 230 AEEKLCPDGLRYNPNVNFDVYPCQYPNEV 316
AE +L DGL Y+PN +D+ C + + V
Sbjct: 42 AESELVCDGLFYHPNEIWDLKSCPFDHRV 70
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 293 PCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNCSGFRNGVNGV 442
P Y + V ++L PPQ C + G FK+G N S ++G+
Sbjct: 228 PQSYYDSVSMFFYNTLHPPQLPVKCSNNLGAFKVGTVTNESFIFEIISGL 277
>01_03_0127 +
12787664-12787907,12790660-12790715,12792203-12792473,
12792600-12792832
Length = 267
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 347 PQPTELCPHQFGYFKLGDARNCSGFRNGVN-GVGYDFVCPDGLAF 478
P P+ C + F GD+ +G G+ G+GY F P+G AF
Sbjct: 22 PSPSASCARRPVVFAFGDSNTDTG---GIAAGMGYYFPLPEGRAF 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,251,118
Number of Sequences: 37544
Number of extensions: 532502
Number of successful extensions: 1501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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