Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G19
         (835 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VW32 Cluster: CG8756-PA, isoform A; n=26; Endopterygo...    46   0.002
UniRef50_Q7N3E9 Cluster: Similar to 3-phosphoshikimate 1-carboxy...    36   1.3  
UniRef50_Q99LB6-3 Cluster: Isoform 3 of Q99LB6 ; n=1; Mus muscul...    33   6.7  
UniRef50_A0W4T7 Cluster: Multi-sensor hybrid histidine kinase pr...    33   6.7  

>UniRef50_Q9VW32 Cluster: CG8756-PA, isoform A; n=26;
           Endopterygota|Rep: CG8756-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 570

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 223 NADQLCDGRPADEYFRLTTEGDCRDVVR 306
           + +++C  RPADEYFRL T+GDCR+V R
Sbjct: 28  DVEEVCADRPADEYFRLETDGDCREVYR 55


>UniRef50_Q7N3E9 Cluster: Similar to 3-phosphoshikimate
           1-carboxyvinyltransferase; n=1; Photorhabdus luminescens
           subsp. laumondii|Rep: Similar to 3-phosphoshikimate
           1-carboxyvinyltransferase - Photorhabdus luminescens
           subsp. laumondii
          Length = 434

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +2

Query: 503 SHTTIQIRSYNN*SKLKIRTYKFGRSINRQLKSTVLYRFYMNVLFS*YAEDIKLIFQAVN 682
           S+    I S N  SK+ IR+Y FG +IN ++   +  +F MN+ ++    ++ +  +  +
Sbjct: 238 SYIASSILSINRPSKITIRSYYFGNTINERVLFDIYKKFGMNLNYNPIKNELNISLEKEH 297

Query: 683 RTV 691
            T+
Sbjct: 298 NTI 300


>UniRef50_Q99LB6-3 Cluster: Isoform 3 of Q99LB6 ; n=1; Mus
           musculus|Rep: Isoform 3 of Q99LB6 - Mus musculus (Mouse)
          Length = 226

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  VFAERHGSTRVSVSRCVISWFAGMQYFSCEA 191
           VF  R GS+ +S + C  +W   MQYF C+A
Sbjct: 155 VFCPRAGSSSLSSTACGEAWLVLMQYFPCDA 185


>UniRef50_A0W4T7 Cluster: Multi-sensor hybrid histidine kinase
           precursor; n=1; Geobacter lovleyi SZ|Rep: Multi-sensor
           hybrid histidine kinase precursor - Geobacter lovleyi SZ
          Length = 1199

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -1

Query: 325 YSNMAVT*RHRGSHLRW*DGNIHRRVYRRTTDQRSAHLQLR 203
           +  MAV+ +H+   L+  +G + +RV  RT+D R+A  Q+R
Sbjct: 523 FQQMAVSLQHQSLELQSLNGELEQRVQERTSDLRNAEAQMR 563


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,592,541
Number of Sequences: 1657284
Number of extensions: 14159545
Number of successful extensions: 33011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33000
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72553824147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)