Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G19
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887...    30   2.6  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    29   6.0  
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129...    28   8.0  

>03_02_0731 -
           10786122-10787018,10787859-10788449,10788659-10788740,
           10789914-10790107
          Length = 587

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 294 RCRQVTAIFEYRYLPRSLSLSTEYFVM 374
           RCR++ +  E R+LP  +S+ TE+F +
Sbjct: 54  RCRRLASALERRFLPCYVSMETEWFFL 80


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 350 RKRTWKVSIFKYGSYLTT 297
           ++R WKV ++KY  YLTT
Sbjct: 322 KRRRWKVIVWKYAVYLTT 339


>05_04_0077 -
           17712043-17712246,17712487-17712522,17712746-17712900,
           17713431-17713591,17713950-17714110,17714188-17715657,
           17715704-17715998,17716461-17717737,17717826-17718137,
           17718223-17718356,17718449-17718521,17719994-17720059,
           17720748-17720936
          Length = 1510

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 317 YGSYLTTSRQSPSVVRRKYSSAGLPSH 237
           YGS+L T ++SP  + +  S A LP+H
Sbjct: 116 YGSFLPTYQRSPPALSQSGSPAVLPNH 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,488,943
Number of Sequences: 37544
Number of extensions: 369998
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)