Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G19
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)                 30   2.0  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   29   3.5  
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)               29   4.6  
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)                     29   6.1  
SB_15705| Best HMM Match : Autophagy_C (HMM E-Value=4.6)               29   6.1  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                28   8.1  
SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3)                   28   8.1  

>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
          Length = 551

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 238 TTDQRSAHLQLRRHLVASHE-KYCIPANQLITHRDTETRVEPWRSAKTG 95
           T+ +   HL+ +R L+ + E K  + +  L+T   TE  +E WR ++ G
Sbjct: 391 TSGRVGQHLKTKRGLITTPELKDLLDSGDLVTATATEKPIEEWRPSELG 439


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
 Frame = +2

Query: 428 TNPNSTFFKDEVFH----IFNVNELINLPSHTTIQIRSYNN*SKLKIRTYKFGRSINRQL 595
           T PNS F+   ++H    +++  EL++  S T  QI   N  +K+ I       +IN+ +
Sbjct: 274 TTPNSEFYAASIYHPPNPVYDAAELLDFMSDTCDQILLENPNAKIIIAGDINQLNINKDV 333

Query: 596 KSTVLYRFYMNVLFS*YAEDI---KLIFQAVNRTVI--VVPXINNR 718
               ++ F  +  F   + +I   KL    +N  VI  +V  + NR
Sbjct: 334 DFVRVFSFDFSKAFDSVSHEIVCRKLKSYDINPYVINLIVSFLGNR 379


>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
          Length = 1085

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 686 TVIVVPXINNRNFCENDYTCYR*RLLCLPPGFSYKVFNEFCCNK*NY 826
           T   VP  NN N+    Y     + L LPPG +       CCN  NY
Sbjct: 549 TTTTVPWNNNNNY----YRPLEQQQLLLPPGTTTTTTTTACCNNNNY 591


>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
          Length = 422

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = -3

Query: 338 WKVSIFKYGSYLTTSRQSPSVVRRKYSSAGLPSHNXXXXXXXXXXXXSCRFTREVLHTSE 159
           WK+   +  SY  T+     + R+   +   P+HN               + RE++   E
Sbjct: 351 WKLPYSQTTSYQPTTHGHSHIARQPVINKLTPTHNPWTRPYTVPLSNMWTYVREIVREHE 410

Query: 158 PTNNTPRHRNAC 123
            +N   R+   C
Sbjct: 411 FSNTNSRNEQTC 422


>SB_15705| Best HMM Match : Autophagy_C (HMM E-Value=4.6)
          Length = 342

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 593 LKSTVLYRFYMNVLFS*YAEDIKLIF 670
           L  T++Y F+ N + S Y ED KL+F
Sbjct: 145 LSKTLMYDFHYNFVKSKYGEDAKLLF 170


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = -1

Query: 370 TKYSVDNESERGRYLYSNMAVT*RHRGSHLRW*DGNIHRRVYRRTTDQRSAHLQL----R 203
           T +   N S   R  +S+   T R +G+  R      H       T+Q  AH +      
Sbjct: 193 TTHHTQNNSSHTRNNWSHTRTTHRTQGTTRRTEQHIAHTEQLIAHTEQLIAHTEQVITQT 252

Query: 202 RHLVASHEKYCIPANQLITHRD 137
            HL+A  EK      QL +H++
Sbjct: 253 EHLIAHTEKLIAHKEQLFSHKE 274


>SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3)
          Length = 363

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 193 QDDDGAGDEPNADQLCDGRPADEYFRLTTEGDCRD 297
           +DDDG GDE + D + D    D+   +  +GD  D
Sbjct: 92  EDDDGDGDEDDDDDVDDDGDEDDDGDVDDDGDVDD 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,470,098
Number of Sequences: 59808
Number of extensions: 468798
Number of successful extensions: 1227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)