Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G18
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical ...    50   1e-06
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    28   4.7  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    27   6.2  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    27   6.2  

>AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical
           protein Y57E12AM.1 protein.
          Length = 79

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +3

Query: 105 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 284
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 285 AXXXXXXXXXXXXWVGIYV 341
           +            WVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 293 FWFRYFVLVAMGRDLCVIS 349
           FWFRY+VLV+ G   C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 182 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 325
           +N+++L  L    R  +Y S      ++ ++ +TFI+G  +I W  ++VL  +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 182 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 325
           +N+++L  L    R  +Y S      ++ ++ +TFI+G  +I W  ++VL  +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,172
Number of Sequences: 27780
Number of extensions: 195036
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)